Proteomics

Dataset Information

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Outer membrane proteome of Leptospira; revealing the bottom of iceberg


ABSTRACT: Leptospira, the causative agent of leptospirosis is known to have several proteases with potential to degrade extracellular matrix. However, a multipronged approach to identify, classify, characterize and elucidate their role has not been attempted. In this study, we carried out in-depth proteomic analysis of Triton X-114 fractions of Leptospirainterrogansusing high-resolution LC-MS/MS. Our analysis resulted in the identification of We have identified 2957 proteins that account 80.6% proteins of Leptospira and their subcellular distribution. The analysis showed differential enrichment of proteins in aqueous, detergent and pellet fractions with respect to the subcellular localization predicted by on CELLO v.2.5. It is found that highest number of OMP and pathogenic protein species were found in aqueous and pellet representing the cytoplasm and inner membranewhile the detergent fraction representing the OM contain highest amount of OMPs and pathogenic proteins even though the number of protein species were less. Thus the higher number of OMP and pathogenic proteins in the inner compartments of the cell carry the possibility of their deployment on the OM in abundance under pathogenic conditions.

INSTRUMENT(S): Orbitrap Fusion

ORGANISM(S): Leptospira Interrogans Serovar Copenhageni Str. Fiocruz L1-130

SUBMITTER: Madathiparambil G. Madanan  

LAB HEAD: Dr M. G. Madanan

PROVIDER: PXD016204 | Pride | 2020-09-01

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
A_bRPLC_080818.msf Msf
A_bRPLC_10_R1.raw Raw
A_bRPLC_10_R2.raw Raw
A_bRPLC_11_R1.raw Raw
A_bRPLC_11_R2.raw Raw
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Publications

Triton X-114 Fractionated Subcellular Proteome of Leptospira interrogans Shows Selective Enrichment of Pathogenic and Outer Membrane Proteins in the Detergent Fraction.

Thoduvayil Sikha S   Dhandapani Gunasekaran G   Brahma Rahul R   Devasahayam Arokia Balaya Rex R   Mangalaparthi Kiran K KK   Patel Krishna K   Kumar Manish M   Tennyson Jebasingh J   Satheeshkumar P K PK   Kulkarni Mahesh J MJ   Pinto Sneha M SM   Prasad T S Keshava TSK   Madanan Madathiparambil G MG  

Proteomics 20200917 19-20


The Triton X-114-based solubilization and temperature-dependent phase separation of proteins is used for subcellular fractionation where, aqueous, detergent, and pellet fractions represents cytoplasmic, outer membrane (OM), and inner membrane proteins, respectively. Mass spectrometry-based proteomic analysis of Triton X-114 fractions of proteomic analysis of Leptospira interrogans identified 2957 unique proteins distributed across the fractions. The results are compared with bioinformatics predi  ...[more]

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