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Oats comparison under Fusarium graminearum infection

ABSTRACT: Infection of Belinda and Argamak oat varieties with Fusarium

INSTRUMENT(S): LTQ Orbitrap XL ETD

ORGANISM(S): Avena Sativa Fusarium Graminearum

TISSUE(S): Panicle

SUBMITTER: Fredrik Levander

LAB HEAD: Fredrik Levander

PROVIDER: PXD016706 | Pride | 2020-03-10

REPOSITORIES: Pride

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Dataset's files

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			Action	DRS
	140605_Jon_10_01.mgf	Mgf
	140605_Jon_10_01.raw	Raw
	140605_Jon_11_01.mgf	Mgf
	140605_Jon_11_01.raw	Raw
	140605_Jon_12_01.mgf	Mgf

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1 - 5 of 192

Publications

Interactive proteogenomic exploration of response to Fusarium head blight in oat varieties with different resistance.

Willforss J J Leonova S S Tillander J J Andreasson E E Marttila S S Olsson O O Chawade A A Levander F F

Journal of proteomics 20200214

Fusarium species are cereal pathogens that cause the Fusarium Head Blight (FHB) disease. FHB can reduce yield, cause mycotoxin accumulation in the grain and reduce germination efficiency of the harvested seeds. Understanding the biochemical interactions between the host plants and the pathogen is crucial for controlling the disease and for the development of cultivars with improved tolerance to FHB. Here, we studied morphological and proteomic differences between the susceptible oat variety Beli ...[more]

PMID: 32061841

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Fusarium graminearum in vitro cellular proteome

Project description:The plant pathogenic fungus Fusarium graminearum (Fgr) creates economic and health risks in cereals agriculture. Fgr causes head blight (or scab) of wheat and stalk rot of corn, reducing yield, degrading grain quality and polluting downstream food products with mycotoxins. Fungal plant pathogens must secrete proteases to access nutrition and to breakdown the structural protein component of the plant cell wall. Research into the proteolytic activity of Fgr is hindered by the complex nature of the suite of proteases secreted. We used a systems biology approach comprising genome analysis, transcriptomics and label-free quantitative proteomics to characterise the peptidases deployed by Fgr during growth. A combined analysis of published microarray transcriptome datasets revealed seven transcriptional groupings of peptidases based on in vitro growth, in planta growth, and sporulation behaviours. An orbitrap MS/MS proteomics technique defined the extracellular proteases secreted by Fusarium graminearum. This dataset includes the cellular control sample that was analysed with shotgun mass-spec proteomics followed SearchGUI and Peptide shaker searches.

2015-10-08 | PXD002840 | Pride

Transcriptome-based comparison of the infection response in maize silks between Fusarium graminearum and Ustilago maydis

Project description:In this study, RNA-seq based comparative transcriptome analysis was used to study the response between Fusarium graminearum and Ustilago maydis to different growth conditions. RNA-seq libraries were generated from fungal filaments growing in culture (complete medium) and from infected maize silk. This data set contains the data for the Fusarium graminearum and Ustilago maydis medium growth condition.

2019-03-17 | E-MTAB-4562 | biostudies-arrayexpress

Fusarium graminearum in vitro secretome

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The Fusarium graminearum Histone H3 K27 Methyltransferase KMT6 Regulates Development and Expression of Secondary Metabolite Gene Clusters

Project description:We performed ChIP-seq of histone modifications and RNA-seq in WT and kmt6 mutant Fusarium graminearum grown in high and low nitrogen conditions. Two replicates of RNA seq for WT and kmt6 strains at high and low nitrogen. Four histone modification ChIPs in WT and kmt6 mutant strains at high and low nitrogen, plus two histone modifications in a kmt6+ complemented strain at high nitrogen.

2014-02-27 | E-GEOD-50689 | biostudies-arrayexpress

Genome-wide gene expression analysis of Fusarium graminearum isolate PH-1 in spores and mycelium

Project description:Using RNA-Seq data from the mycelium of Fusarium graminearum, we found weakly expressed regions on all of the four chromosomes that exactly matched with non-conserved regions. Comparison of gene expression between two different developmental stages (spores and mycelium) showed that the expression of genes in conserved regions is stable, while gene expression in non-conserved regions is much more influenced by developmental stage. Examination of gene expression in two developmental stages (spores and mycelium). Three biological replicates were performed for each stage.

2014-03-01 | E-GEOD-55477 | biostudies-arrayexpress

Potato grown under Nordic conditions 2018-2019

Project description:Comparison of leaves from potato grown in different fields during 2018 and 2019

2024-08-12 | PXD026690 | Pride

Potato grown under Nordic conditions 2016

Project description:Comparison of leaves from potato grown in different fields during 2016

2024-08-12 | PXD026661 | Pride

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Barley cv Morex inoculated with Fusarium graminearum and water as mock control

Project description:Barley cv. Morex inoculated with Fusarium graminearum (isolate Butte 86) or water (mock). Sampled at 24, 48, 72, 96 and 144 hours after treatment. ****[PLEXdb(http://www.plexdb.org) has submitted this series at GEO on behalf of the original contributor, Jayanand Boddu. The equivalent experiment is BB9 at PLEXdb.] time: 24 - Treated or untreated: WATER(5-replications); time: 24 - Treated or untreated: Fusarium(5-replications); time: 48 - Treated or untreated: WATER(4-replications); time: 48 - Treated or untreated: Fusarium(4-replications); time: 72 - Treated or untreated: WATER(5-replications); time: 72 - Treated or untreated: Fusarium(5-replications); time: 96 - Treated or untreated: WATER(4-replications); time: 96 - Treated or untreated: Fusarium(4-replications); time: 144 - Treated or untreated: WATER(4-replications); time: 144 - Treated or untreated: Fusarium(4-replications)

2011-11-22 | E-GEOD-33407 | biostudies-arrayexpress

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