Proteomics

Dataset Information

0

Interactions of CDK19 with MED12 and cyclin-C assessed by chemical cross-linking mass spectrometry

ABSTRACT: Chemical cross-linking coupled to mass spectrometry was used to study binary and ternary complexes involving cyclin-dependent kinase 19 (CDK19), cyclin-C, and an N-terminal fragment of subunit 12 of the Mediator complex (MED12 1-100). Cross-linking was performed using disuccinimidyl suberate (DSS). These results were generated in the context of the study published as Klatt et al., A precisely positioned MED12 activation helix stimulates CDK8 kinase activity, Proc. Natl. Acad. Sci. USA 2020 (DOI: 10.1073/pnas.1917635117) with the associated data set PXD015394, but were not included in the article.

INSTRUMENT(S): Orbitrap Fusion Lumos

ORGANISM(S): Homo Sapiens (human)

SUBMITTER: Alexander Leitner  

LAB HEAD: Claus-D. Kuhn

PROVIDER: PXD019251 | Pride | 2020-05-18

REPOSITORIES: Pride

Json Xml

Dataset's files

Source:
Action DRS
Cdk19_2mer_sh.fasta Fasta
Cdk19_3mer_sh.fasta Fasta
Cdk19_file_overview.xlsx Xlsx
Cdk19_results.xlsx Xlsx
aleitner_D1901_203.raw Raw
Items per page:
1 - 5 of 36
altmetric image

Publications

A precisely positioned MED12 activation helix stimulates CDK8 kinase activity.

Klatt Felix F   Leitner Alexander A   Kim Iana V IV   Ho-Xuan Hung H   Schneider Elisabeth V EV   Langhammer Franziska F   Weinmann Robin R   Müller Melanie R MR   Huber Robert R   Meister Gunter G   Kuhn Claus-D CD  

Proceedings of the National Academy of Sciences of the United States of America 20200127 6

The Mediator kinase module regulates eukaryotic transcription by phosphorylating transcription-related targets and by modulating the association of Mediator and RNA polymerase II. The activity of its catalytic core, cyclin-dependent kinase 8 (CDK8), is controlled by Cyclin C and regulatory subunit MED12, with its deregulation contributing to numerous malignancies. Here, we combine in vitro biochemistry, cross-linking coupled to mass spectrometry, and in vivo studies to describe the binding locat  ...[more]

Similar Datasets

Proteomics,Multiomics A precisely positioned MED12 activation helix stimulates CDK8 kinase activity
2020-01-16 | PXD015394 | Pride
Proteomics The TRiC Chaperonin and Prefoldin Cooperate to Fold and Assemble Viral Capsid Oligomers
2021-02-04 | PXD019751 | Pride
Proteomics Characterization of Integrator module INTS10-INTS13-INTS14 and its connection to the cleavage module Part I
2020-06-18 | PXD015682 | Pride
Proteomics Conformational coupling of redox-driven Na+ translocation in Vibrio cholerae NADH:quinone oxidoreductase
2023-08-31 | PXD039289 | Pride
Proteomics A structural mechanism for PP2A-B56alpha inhibition by CIP2A
2022-10-21 | PXD020636 | Pride
Proteomics Folding of beta-tubulin by the chaperonin TRiC/CCT studied by chemical cross-linking and mass spectrometry
2022-12-08 | PXD030590 | Pride
Proteomics Characterization of Integrator module INTS10-INTS13-INTS14 and its connection to the cleavage module Part II
2020-06-18 | PXD017996 | Pride
Proteomics Structural analysis of the native TREX complex from S. cerevisiae
2023-09-15 | PXD025843 | Pride
Proteomics Molecular architecture of the human tRNA ligase complex
2021-12-15 | PXD025662 | Pride
Proteomics Cross-linking mass spectrometry of a complex between the chaperonin TRiC/CCT and its cochaperones, prefoldin and phosducin-like protein 2A
2023-12-11 | PXD040144 | Pride