Proteomics

Dataset Information

0

Porcine intestinal epithelial cells


ABSTRACT: Porcine deltacoronavirus (PDCoV) is an emerging pathogen of swine belonging to family Coronaviridae, genus Deltacoronavirus. PDCoV predominantly infects the porcine intestinal epithelial cells (IPECs) causing severe diarrhea and/or vomiting, dehydration, and death in piglets. However, there are no researches for clarifying the changes of proteins expression levels in the IPECs infected with PDCoV. To better understand the host response to PDCoV infection, in this study, an isobaric tags for relative and absolute quantification (iTRAQ) labeling combined with liquid chromatography-tandem mass spectrometry (LC-MS)-based quantitative proteomic analysis of PDCoV-infected IPEC-J2 cells were performed to investigate the differentially expressed cellular proteins in the PDCoV-infected IPEC-J2 cells. As a result, a total of 5,502 host proteins were quantified at 24 hours post-infection (hpi) in mock and infected cells, among which 78 cellular proteins were differentially expressed with 23 up-regulated proteins and 55 down-regulated proteins. Bioinformatics analysis demonstrated that most of these regulated proteins participated in immune system process and structural molecule activity. Further, expression levels of two representative proteins, ANAPC7 and IFIT1, were confirmed by relative real-time RT-PCR and western blot analysis. The data presented here will provide an overview of host cell response to PDCoV, which could benefit the development of potential antiviral research.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Sus Scrofa Domesticus (domestic Pig)

TISSUE(S): Epithelial Cell, Cell Culture

SUBMITTER: Xinrong Zhou  

LAB HEAD: Hanchun Yang

PROVIDER: PXD019975 | Pride | 2020-10-19

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
MJ20171102023_ZXR_iTRAQ_1.raw Raw
MJ20171102023_ZXR_iTRAQ_10.raw Raw
MJ20171102023_ZXR_iTRAQ_2.raw Raw
MJ20171102023_ZXR_iTRAQ_3.raw Raw
MJ20171102023_ZXR_iTRAQ_4.raw Raw
Items per page:
1 - 5 of 12
altmetric image

Publications

Quantitative Proteomic Analysis of Porcine Intestinal Epithelial Cells Infected with Porcine Deltacoronavirus Using iTRAQ-Coupled LC-MS/MS.

Zhou Xinrong X   Zhou Lei L   Ge Xinna X   Guo Xin X   Han Jun J   Zhang Yongning Y   Yang Hanchun H  

Journal of proteome research 20201012 11


Porcine deltacoronavirus (PDCoV) is an emergent enteropathogenic coronavirus associated with swine diarrhea. Porcine small intestinal epithelial cells (IPEC) are the primary target cells of PDCoV infection in vivo. Here, isobaric tags for relative and absolute quantification (iTRAQ) labeling coupled to liquid chromatography-tandem mass spectrometry (LC-MS/MS) was used to quantitatively identify differentially expressed proteins (DEPs) in PDCoV-infected IPEC-J2 cells. A total of 78 DEPs, includin  ...[more]

Similar Datasets

2020-08-13 | GSE156078 | GEO
2015-12-31 | GSE67407 | GEO
2020-05-27 | PXD016396 | Pride
| PRJNA633864 | ENA
2023-06-01 | GSE100838 | GEO
| PRJNA375827 | ENA
2014-06-28 | GSE58876 | GEO
2021-11-30 | GSE174377 | GEO
| PRJNA513899 | ENA
2017-04-19 | GSE94139 | GEO