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Profile of the SARS-CoV-2 RNA interactome

ABSTRACT: SARS-CoV-2 is an RNA virus whose success as a pathogen relies on its ability to repurpose host RNA-binding proteins (RBPs) to form its own RNA interactome. Here, we developed and applied a robust ribonucleoprotein capture protocol to uncover the SARS-CoV-2 RNA interactome. We report 109 host factors that directly bind to SARS-CoV-2 RNAs including general antiviral factors such as ZC3HAV1, TRIM25, and PARP12. Applying RNP capture on another coronavirus HCoV-OC43 revealed evolutionarily conserved interactions between viral RNAs and host proteins. Network and transcriptome analyses delineated antiviral RBPs stimulated by JAK-STAT signaling and proviral RBPs responsible for hijacking multiple steps of the mRNA life cycle. By knockdown experiments, we further found that these viral-RNA-interacting RBPs act against or in favor of SARS-CoV-2. Overall, this study provides a comprehensive list of RBPs regulating coronaviral replication and opens new avenues for therapeutic interventions.

INSTRUMENT(S): Orbitrap Fusion Lumos

ORGANISM(S): Homo Sapiens (human) Chlorocebus Sabaeus

TISSUE(S): Colon, Kidney

SUBMITTER: Yeon Choi

LAB HEAD: V. Narry Kim

PROVIDER: PXD024808 | Pride | 2021-04-28

REPOSITORIES: Pride

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			Action	DRS
	File_info.xlsx	Xlsx
	HCoV-OC43_HCT-8_Oxidation__M_Sites.txt	Txt
	HCoV-OC43_HCT-8_allPeptides.txt	Txt
	HCoV-OC43_HCT-8_evidence.txt	Txt
	HCoV-OC43_HCT-8_modificationSpecificPeptides.txt	Txt

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