Dataset Information

PfAP2-MRP DNA-binding protein is a master regulator of parasite pathogenesis during malaria parasite blood stages

ABSTRACT: The pathogenicity of the malaria parasites results from their ability to invade and remodel red blood cells (RBCs), expressing antigenic variant proteins for immune evasion and survival, and then to egress from the host cell. These sequential processes require concerted actions of a large number of proteins during the intraerythrocytic developmental cycle (IDC)(Boddey and Cowman, 2013; Cowman et al., 2017; Tan and Blackman, 2021), but the molecular basis of the required regulation is only partially understood. Here, we have characterized an essential Apicomplexan AP2 (ApiAP2) transcription factor (we refer to it as PfAP2-MRP; Master Regulator of Pathogenesis) that shows two peaks of expression during the IDC at 16- and 40-hour post-invasion (h.p.i.). When expression of PfAP2-MRP at 40 h.p.i. was disrupted using an inducible gene knockout approach, ∆PfAP2-MRP parasites unable to form mature merozoites and egress from the host RBCs owing to strong down-regulation of several known egress- and invasion-associated genes, in addition to several novel hypothetical genes thought to be involved in these key life cycle processes. Disruption of PfAP2-MRP expression at 16 h.p.i. results in transcriptional activation of the majority of silenced var genes observed at both bulk and single-cell level. This is also reflected by a significantly higher level of immuno-recognition of the exported proteins on the ∆PfAP2-MRP parasite-infected RBCs by pooled sera from malaria-exposed individuals from an endemic region. In addition, overexpression of many early gametocyte marker genes was also observed in ∆PfAP2-MRP parasites at both 40 h.p.i., and at 16 h.p.i. PfAP2-MRP directly regulates these genes by binding to their promoter region or indirectly through 14 other downstream AP2 transcription factors. Taken together, we conclude that PfAP2-MRP is an upstream transcriptional regulator that participates in mutually exclusive expression patterns shown by the var family of genes and is a critical determinant of parasite's growth during the IDC.

INSTRUMENT(S): Q Exactive HF

ORGANISM(S): Plasmodium Falciparum

SUBMITTER: AMIT KUMAR SUBUDHI

LAB HEAD: Prof. Arnab Pain

PROVIDER: PXD030308 | Pride | 2024-01-26

REPOSITORIES: Pride

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Dataset's files

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			Action	DRS
	06042021_RFS1002102537_1_AP2HA_16_Hrs_Rep1_Amit_Rahul_QE.raw	Raw
	06042021_RFS1002102537_2_AP2HA_16_Hrs_Rep2_Amit_Rahul_QE.raw	Raw
	06042021_RFS1002102537_3_AP2HA_16_Hrs_Rep3_Amit_Rahul_QE.raw	Raw
	06042021_RFS1002102537_5_AP2_16_Hrs_4_Amit_Rahul_QE_Replicate1.raw	Raw
	06042021_RFS1002102537_5_AP2_16_Hrs_4_Amit_Rahul_QE_Replicate2.raw	Raw

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Publications

DNA-binding protein PfAP2-P regulates parasite pathogenesis during malaria parasite blood stages.

Subudhi Amit Kumar AK Green Judith L JL Satyam Rohit R Salunke Rahul P RP Lenz Todd T Shuaib Muhammad M Isaioglou Ioannis I Abel Steven S Gupta Mohit M Esau Luke L Mourier Tobias T Nugmanova Raushan R Mfarrej Sara S Shivapurkar Rupali R Stead Zenaida Z Rached Fathia Ben FB Ostwal Yogesh Y Sougrat Rachid R Dada Ashraf A Kadamany Abdullah Fuaad AF Fischle Wolfgang W Merzaban Jasmeen J Knuepfer Ellen E Ferguson David J P DJP Gupta Ishaan I Le Roch Karine G KG Holder Anthony A AA Pain Arnab A

Nature microbiology 20231026 11

Malaria-associated pathogenesis such as parasite invasion, egress, host cell remodelling and antigenic variation requires concerted action by many proteins, but the molecular regulation is poorly understood. Here we have characterized an essential Plasmodium-specific Apicomplexan AP2 transcription factor in Plasmodium falciparum (PfAP2-P; pathogenesis) during the blood-stage development with two peaks of expression. An inducible knockout of gene function showed that PfAP2-P is essential for trop ...[more]

PMID: 37884813

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Project description:The emerging picture of transcriptional regulation is one of unexpected complexity. It is now clear that single transcription factors control hundreds, if not thousands, of direct targets by binding their genomic loci, but it is not understood how many of these are major players and how many are supporting cast. To address this, we leverage a well-characterized developmental network in Arabidopsis and map genome-wide binding of related proteins in multiple tissues. The transcription factor APETALA2 (AP2) has numerous functions, including roles in floral organ identity, seed development and stem cell maintenance. We focus on the role of AP2 in the floral transition and map direct targets on a genome-wide scale. We show that ap2 mutants flower early in long and short days, and that AP2 binds to many loci, most prominently floral pathway integrators, microRNAs and floral organ identity genes, many of which exhibit AP2-dependent transcription. Opposing, logical effects are evident in AP2 binding to two developmental microRNA genes that control AP2 expression, with AP2 positively regulating miR156 and negatively regulating miR172, forming a complex direct feedback loop, which also included all but one of the AP2-like miR172 target clade members. We also seek conserved targets by comparing the genome-wide direct target repertoire of AP2 with that of SCHLAFMÜTZE (SMZ), another member of the AP2-like miR172 target clade that shares partial redundancy, as evidenced by a hexuple mutant for the entire clade that flowered extremely early. Clear similarities and divergence are exposed in the AP2 and SMZ direct target repertoires. Finally, using an inducible expression system, we demonstrate that AP2 has dual molecular roles. It functions both as a transcriptional activator and repressor, directly inducing the expression of the floral repressor AGAMOUS-LIKE 15 (AGL15), and directly repressing the transcription of floral activators like SUPPRESSOR OF OVEREXPRESSION OF CONSTANS 1 (SOC1). ChIP-Seq of two biological replicates for ATH-AP2 and respective control samples