Proteomics

Dataset Information

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Proteomic profiling reveals distinct phases to the restoration of chromatin following DNA replication


ABSTRACT: Chromatin organization must be maintained during cell proliferation to preserve cellular identity and genome integrity. However, DNA replication results in transient displacement of DNA bound proteins, and it is unclear how they regain access to newly replicated DNA. Using quantitative MS-based proteomics coupled to isolation of proteins on nascent DNA (iPOND), we provide time resolved binding kinetics for thousands of proteins behind replisomes in the lung fibroblast cell line TIG-3 (JCRB0506, JCRB Cell Bank). Performing hierarchical clustering, we identified four groups of protein behaviour: Transient enriched on nascent, restored within 11min, peaking in G2/M, and delayed restored. Overall, our data show that most proteins (85%) regain access within the first 2h after the passage of the fork. Only a small percentage of proteins is restored after 2h post-replication, with 5.3 % of factors peaking in G2/M and 9.1% factors not restored before the next G1 phase. We provide evidence that DNA replication not only disrupts but also promotes recruitment of transcription factors and chromatin remodelers, providing a significant advance in understanding how DNA replication could contribute to programmed changes of cell memory.

INSTRUMENT(S): Orbitrap Fusion

ORGANISM(S): Homo Sapiens (human)

SUBMITTER: Vanesa Alvarez  

LAB HEAD: Constance Alabert

PROVIDER: PXD036236 | Pride | 2023-02-02

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
Data_information.xlsx Xlsx
Homo_sapiens_SpTr_canonical_20190902.fasta Fasta
IP_combined.zip Other
Input_combined.zip Other
Input_mqpar.xml Xml
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