Proteomics

Dataset Information

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Degradation mechanism of important regulator AtrA mediated by ClpXP in Streptomyces roseosporus


ABSTRACT: 3×Flag-atrA strain was grown in YEME and 50 mL were collected after 24 h. Cells were resuspended in phosphate buffer (pH=7.4) (PBS) and sonicated. After centrifugation at 12000 rpm, the supernatant was transferred and incubated with FLAG affinity gel (Yeasen) at 4 °C. The FLAG affinity gel was washed three times with 1 mL binding buffer (PBS contains 10% glycerol). After centrifugation at 2000 rpm, 500 μL PBS was added, and the interaction proteins were eluted after denaturation. WT strain was used as control. Protein identification and analysis was provided by Jingjie PTM BioLab (Hangzhou, China). Proteins were expressed in BL21 with the plasmids pET-28a-3×Flag-atrA and pET28a-clpX, respectively. The purified proteins were mixed and incubated at 30 °C for 3 h. The reaction system consisted of 4 μg AtrA, 4 μg ClpX and 3 mM ATP. The elution method is the same as for the pull-down assay after FLAG affinity gel purification at 4 °C. Samples were analyzed by western blot using anti-His mouse monoclonal antibody. AtrA was expressed in BL21 with the plasmid pET-32a-atrA and incubated with cell lysate of Δprc at 30 °C for 1 h. The protein processing and pupylation analysis were provided by Jingjie PTM BioLab (Hangzhou, China).

INSTRUMENT(S): Q Exactive Plus

ORGANISM(S): Streptomyces Filamentosus Nrrl 15998

TISSUE(S): Mycelium

SUBMITTER: weifeng xu  

LAB HEAD: Weifeng Xu

PROVIDER: PXD037377 | Pride | 2024-05-23

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
S9764GI_sample1.raw Raw
S9764GI_sample2.raw Raw
S9764GI_sample3.raw Raw
SD278GP_atra.raw Raw
VA025GI_prcB_A.raw Raw
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Publications

Degradation mechanism of AtrA mediated by ClpXP and its application in daptomycin production in Streptomyces roseosporus.

Xu Wei-Feng WF   Sun Chen-Fan CF   Gao Wen-Li WL   Scharf Daniel H DH   Zhu Chen-Yang CY   Bu Qing-Ting QT   Zhao Qing-Wei QW   Li Yong-Quan YQ  

Protein science : a publication of the Protein Society 20230401 4


The efficiency of drug biosynthesis depends on different transcriptional regulatory pathways in Streptomyces, and the protein degradation system adds another layer of complexity to the regulatory processes. AtrA, a transcriptional regulator in the A-factor regulatory cascade, stimulates the production of daptomycin by binding to the dptE promoter in Streptomyces roseosporus. Using pull-down assays, bacterial two-hybrid system and knockout verification, we demonstrated that AtrA is a substrate fo  ...[more]

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