Proteomics

Dataset Information

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Evaluation of EVE peptidome presentation on B16 cell line and tumors


ABSTRACT: Cancer immunotherapies have greatly improved the treatment of several solid cancers, albeit a large fraction of the patients still does not benefit from such treatments. Personalized therapies are envisioned to lead to improved outcomes yet they have largely been leveraging neoepitopes arising from missense somatic mutations, and as such primarily patients with relatively high tumor mutational burden (TMB) are eligible. With the goal to enhance and broaden its application, we here submit our results regarding our murine B16 studies with a focus on endogenous viral elements (EVE) derived peptidome. We observe how external signal or tumor microenvironment can alter this tumor model EVE presentation, while also keeping a significant overlap of EVE ligands across all biological treatments.

INSTRUMENT(S): ultraflex, TripleTOF 5600

ORGANISM(S): Mus Musculus (mouse)

TISSUE(S): Epithelial Cell, Skin

DISEASE(S): Melanoma

SUBMITTER: Pablo Garces  

LAB HEAD: Anthony W. Purcell

PROVIDER: PXD040165 | Pride | 2025-03-21

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
B16_IFNpos_SCIEX.zip Other
B16_tumor_Bruker.zip Other
peptide_28148ss.csv Csv
peptide_B16tumors.csv Csv
peptide_Y3s.csv Csv
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