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Timeline of changes in spike conformational dynamics in emergent SARS-CoV-2 variants reveal progressive stabilization of trimer stalk with altered NTD dynamics

ABSTRACT: SARS-CoV-2 emergent variants are characterized by increased viral fitness and each shows multiple mutations predominantly localized to the spike (S) protein. Here, amide hydrogen/deuterium exchange mass spectrometry has been applied to track changes in S dynamics from multiple SARS-CoV-2 variants. Our results highlight large differences across variants at two loci with impacts on S dynamics and stability. A significant enhancement in stabilization first occurred with the emergence of D614G S followed by smaller, progressive stabilization in subsequent variants. Stabilization preceded altered dynamics in the N-terminal domain, wherein Omicron BA.1 S showed the largest magnitude increases relative to other preceding variants. Changes in stabilization and dynamics resulting from S mutations detail the evolutionary trajectory of S in emerging variants. These carry major implications for SARS-CoV-2 viral fitness and offer new insights into variant-specific therapeutic development.

INSTRUMENT(S): Synapt MS

ORGANISM(S): Homo Sapiens (human)

SUBMITTER: Sean Braet

LAB HEAD: Ganesh S Anand

PROVIDER: PXD040717 | Pride | 2023-03-14

REPOSITORIES: Pride

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			Action	DRS
	210311_SpikeWT_2P_0sec_01_IA_final_peptide.csv	Csv
	210311_SpikeWT_2P_0sec_02_IA_final_peptide.csv	Csv
	210311_SpikeWT_2P_0sec_03_IA_final_peptide.csv	Csv
	210312_Spike_2P_D614G_2nd_0sec_01_IA_final_peptide.csv	Csv
	210312_Spike_2P_D614G_2nd_0sec_02_IA_final_peptide.csv	Csv

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