Proteomics

Dataset Information

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A chemistry-based orthogonal enzyme-substrate design strategy for discovery of substrates of protein palmitoyltransferases


ABSTRACT: Attachment of lipids to proteins is a key form of protein modification which intersects with all areas of cellular physiology 1 . Of these, the most pervasive form of protein lipidation is protein S-acylation, also commonly known as protein palmitoylation. Protein palmitoylation is a post-translational modification whereby long chain fatty acids, most typically the 16-carbon palmitic acid, is attached to a cytosol-facing cysteine through a thioester linkage. More than 10% of the proteome is targeted by this modification2, which is catalyzed by members of the zDHHC family of integral membrane enzymes. In humans, there are 23 members of the zDHHC family localized at a variety of organellar membranes as well as the plasma membrane that catalyze protein palmitoylation. Despite having been discovered more than twenty years ago 3 4 the chemistry and biology of many of the zDHHC members remain poorly understood and for several members, few substrates have been characterized. Intriguingly, there are no primary sequence determinants that dictate sites of protein palmitoylation. Cysteines that are proximal to the membrane have a high propensity of being palmitoylated.

INSTRUMENT(S): Orbitrap Fusion

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Permanent Cell Line Cell

SUBMITTER: Shelby Auger  

LAB HEAD: Mark, D.

PROVIDER: PXD041525 | Pride | 2023-10-04

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
08042020lib.fasta Fasta
1_H3.xml Xml
H20_Combined.zip Other
H20_MQ-file.xml Xml
H20_proteinGroups.txt Txt
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Publications

Orthogonal Enzyme-Substrate Design Strategy for Discovery of Human Protein Palmitoyltransferase Substrates.

Puthenveetil Robbins R   Auger Shelby A SA   Gómez-Navarro Natalia N   Rana Mitra Shumsher MS   Das Riki R   Healy Liam Brendan LB   Suazo Kiall F KF   Shi Zhen-Dan ZD   Swenson Rolf E RE   Distefano Mark D MD   Banerjee Anirban A  

Journal of the American Chemical Society 20230929 41


Protein palmitoylation, with more than 5000 substrates, is the most prevalent form of protein lipidation. Palmitoylated proteins participate in almost all areas of cellular physiology and have been linked to several human diseases. Twenty-three zDHHC enzymes catalyze protein palmitoylation with extensive overlap among the substrates of each zDHHC member. Currently, there is no global strategy to delineate the physiological substrates of individual zDHHC enzymes without perturbing the natural cel  ...[more]

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