Proteomics

Dataset Information

0

Arabidopsis thylakoid domains proteome


ABSTRACT: The thylakoid membrane in land plants is organized into an appressed domain (grana), enriched in photosystem (PS) II, and a non-appressed domain (stroma lamellae) enriched in PSI. This ultrastructure ensures control over excitons spillover from PSII to PSI. The bulky machinery required for the repair and biogenesis of PSII and other proteins of the stacked, appressed domain is located in the non-appressed membranes. Thus, the connecting domain (CD) between grana and stroma lamellae, also known as the grana margins (GM), is the key player in both the structural and functional integrity of the photosynthetic machinery. To elucidate the properties and composition of the GM proteome, we have analyzed the different thylakoid domains isolated from membranes in native conformation as well as from thylakoids artificially unstacked to induce a homogeneous protein composition. We show that the composition of the CD is strictly distinct from that of the highly curved structures (the curvature) present at the periphery of grana discs, which are not physically connected to the stroma lamellae. Furthermore, a detailed map of the composition, distribution and interaction of the protein complexes involved in thylakoid membrane function is provided for the grana, CD, curvature and stroma lamellae domains.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Arabidopsis Thaliana (mouse-ear Cress)

TISSUE(S): Plant Cell, Rosette

SUBMITTER: Andrea Trotta  

LAB HEAD: Eva-Mari Aro

PROVIDER: PXD046544 | Pride | 2025-02-11

REPOSITORIES: pride

Dataset's files

Source:
Action DRS
101209_CU_LL1_3of60_iRT_1to25.msf Msf
101209_CU_LL1_3of60_iRT_1to25.mzML Mzml
101209_CU_LL1_3of60_iRT_1to25.mzid.gz Mzid
101209_CU_LL1_3of60_iRT_1to25.raw Raw
101209_CU_LL2_3of60_iRT_1to25.msf Msf
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Publications

Defining the heterogeneous composition of Arabidopsis thylakoid membrane.

Trotta Andrea A   Gunell Sanna S   Bajwa Azfar Ali AA   Paakkarinen Virpi V   Fujii Hiroaki H   Aro Eva-Mari EM  

The Plant journal : for cell and molecular biology 20250201 3


Thylakoid membrane (TM) of land plants is organized into an appressed domain (grana), enriched in photosystem (PS) II and a non-appressed domain (stroma lamellae) enriched in PSI. This ultrastructure controls the exciton spillover from PSII to PSI. The bulky machinery required for the biogenesis and repair of TM protein complexes is located in the non-appressed membranes. Thus, the connecting domain (CD) between grana and stroma lamellae is the key player in both the structural and functional in  ...[more]

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