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Tetranychus urticae

ABSTRACT: RNA-seq analysis of Tetranychus urticae to identify candidate genes involved in pyridaben resistance

PROVIDER: PRJDB10208 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	DRR237437_1.fastq.gz	Fastqsanger.gz
	DRR237437_2.fastq.gz	Fastqsanger.gz
	DRR237438_1.fastq.gz	Fastqsanger.gz
	DRR237438_2.fastq.gz	Fastqsanger.gz
	DRR237439_1.fastq.gz	Fastqsanger.gz

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Tetranychus urticae

Project description:RNA-seq analysis of Tetranychus urticae to identify candidate genes involved in cyflumetofen resistance

| PRJDB8933 | ENA

The genome of Tetranychus urticae reveals herbivorous pest adaptations

Project description:This SuperSeries is composed of the following subset Series: GSE31525: Spider mite preliminary feeding experiment with mites reared on bean and two Arabidopsis thaliana accessions GSE31527: Developmental stage-specific gene expression in the two-spotted spider mite (Tetranychus urticae) GSE32005: Developmental stage-specific small RNA composition in the two-spotted spider mite (Tetranychus urticae) GSE32009: Transcriptional responses of the two-spotted spider mite (Tetranychus urticae) after transfer to different plant hosts Refer to individual Series

2011-11-23 | E-GEOD-32342 | biostudies-arrayexpress

Tetranychus urticae isolate:Tetranychus urticae Koch

Project description:Tetranychus urticae isolate:Tetranychus urticae Koch Raw sequence reads

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Tetranychus urticae

Project description:Spirodiclofen resistance in the spider mite Tetranychus urticae

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Tetranychus urticae

Project description:Tetranychus urticae Genome sequencing

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Tetranychus urticae

Project description:Tetranychus urticae Genome sequencing

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Tetranychus urticae

Project description:Tetranychus urticae Genome sequencing

| PRJNA247366 | ENA

spatially- and tempospatially-stressed spider mites (Tetranychus urticae) vs control spider mites (Tetranychus urticae)

Project description:In this study, we profiled the transcriptional changes in a polyphagous spider mite, Tetranychus urticae, after adaptation to spatial and tempospatial stress. We show heritable down-regulation of genes encoding for core enzymes involved in the citric acid and gluconeogenesis/glycolyse pathways (glucose 6-phosphatase among others). Additionally, we observe heritable transcriptional changes in amino acid pathways (methionine, tyrosine and phenylalanine) and in laterally acquired genes from bacteria (cobalamin-independent methionine synthase). By similiar study results in other organisms, we argue that these heritable transcriptional changes (partially) underpin the changed life history traits observed in our experimental evolution set-up.

2016-05-02 | GSE55623 | GEO

Whole genome tomato transcriptional response to Tetranychus urticae herbivory [Heinz1706]

Project description:The two-spotted spider mite, Tetranychus urticae, is one of the most significant mite pests in agriculture that can feed on more than 1,100 plant hosts, including model plants Arabidopsis thaliana and tomato, Solanum lycopersicum. Here, we described tomato transcriptional responses to spider mite feeding and compared them to Arabidopsis in order to determine conserved and divergent responses to this pest. 2,133 differentially expressed genes (DEGs) were detected at 1, 3, 6, 12 or 24 hours post spider mite infestation (hpi) relative to non-infested control plants. Based on Biological Process Gene Ontology annotations, improved in the course of our analysis, DEGs were grouped in 60 significantly enriched gene sets that highlighted perception of the spider mite attack (1 hpi), metabolic reprogramming (3-6 hpi), and establishment and maintenance of the defense responses (6-24 hpi). We used microarray to assess global gene expression in Solanum lycopersicum cv. Heinz 1706 upon Tetranychus urticae attack. 1 month old tomato plants were subjected to Tetranychus urticae attack through application of 100 adult mites on a terminal leaflet of leaf 3 for various periods of time (timecourse scenario) or hundreds of mites for 1 hour (feeding site scenario).

2015-01-05 | E-GEOD-61074 | biostudies-arrayexpress

Next Generation Sequencing Facilitates Quantitative Analysis of Tetranychus urticae and Its Sibling Species Tetranychus cinnabarinus Transcriptomes

Project description:Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of differentially expressed genes (DEG) between the treated samples of mites.The goal of the study is to elucidate the invasion mechanism that results in the continuous expansion of Tetranychus urticae that has occurred in China. Methods:Transcriptome profiling by RNA sequencing is becoming an attractive method as it facilitates rapid generation, identification and quantification of large number of transcripts, even in the species where no prior genome sequence information is available. Results:the expression of 10 P450(cytochrome P450 monooxygenases), 6 GST(glutathione S-transferases), 13 CCE(carboxy/cholinesterases) and other novel candidate genes was higher (>2-fold) in T. urticae than in T. cinnabarinus as detected by using the digital gene expression (DGE) method.

2015-12-02 | GSE75529 | GEO

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