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Tetranychus urticae

ABSTRACT: RNA-seq analysis of Tetranychus urticae to identify candidate genes involved in cyflumetofen resistance

PROVIDER: PRJDB8933 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	DRR196677_1.fastq.gz	Fastqsanger.gz
	DRR196677_2.fastq.gz	Fastqsanger.gz
	DRR196678_1.fastq.gz	Fastqsanger.gz
	DRR196678_2.fastq.gz	Fastqsanger.gz
	DRR196679_1.fastq.gz	Fastqsanger.gz

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Tetranychus urticae

Project description:RNA-seq analysis of Tetranychus urticae to identify candidate genes involved in pyridaben resistance

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The genome of Tetranychus urticae reveals herbivorous pest adaptations

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2011-11-23 | E-GEOD-32342 | biostudies-arrayexpress

Tetranychus urticae isolate:Tetranychus urticae Koch

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spatially- and tempospatially-stressed spider mites (Tetranychus urticae) vs control spider mites (Tetranychus urticae)

Project description:In this study, we profiled the transcriptional changes in a polyphagous spider mite, Tetranychus urticae, after adaptation to spatial and tempospatial stress. We show heritable down-regulation of genes encoding for core enzymes involved in the citric acid and gluconeogenesis/glycolyse pathways (glucose 6-phosphatase among others). Additionally, we observe heritable transcriptional changes in amino acid pathways (methionine, tyrosine and phenylalanine) and in laterally acquired genes from bacteria (cobalamin-independent methionine synthase). By similiar study results in other organisms, we argue that these heritable transcriptional changes (partially) underpin the changed life history traits observed in our experimental evolution set-up.

2016-05-02 | GSE55623 | GEO

Next Generation Sequencing Facilitates Quantitative Analysis of Tetranychus urticae and Its Sibling Species Tetranychus cinnabarinus Transcriptomes

Project description:Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of differentially expressed genes (DEG) between the treated samples of mites.The goal of the study is to elucidate the invasion mechanism that results in the continuous expansion of Tetranychus urticae that has occurred in China. Methods:Transcriptome profiling by RNA sequencing is becoming an attractive method as it facilitates rapid generation, identification and quantification of large number of transcripts, even in the species where no prior genome sequence information is available. Results:the expression of 10 P450(cytochrome P450 monooxygenases), 6 GST(glutathione S-transferases), 13 CCE(carboxy/cholinesterases) and other novel candidate genes was higher (>2-fold) in T. urticae than in T. cinnabarinus as detected by using the digital gene expression (DGE) method.

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