Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Oryza sativa strain:Nipponbare, emf2a mutant

ABSTRACT: Transcriptome analysis of rice emf2a mutant

PROVIDER: PRJDB10767 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR204810_1.fastq.gz	Fastqsanger.gz
	DRR204810_2.fastq.gz	Fastqsanger.gz
	DRR204811_1.fastq.gz	Fastqsanger.gz
	DRR204811_2.fastq.gz	Fastqsanger.gz
	DRR204812_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 34

Similar Datasets

Global gene expression profiles of Oryza sativa wild type Nipponbare and mutant coi1-13

2011-12-01 | GSE29577 | GEO

Global gene expression profiles of Oryza sativa wild type Nipponbare and mutant coi1-13

Project description:To reveal the underlying molecular mechanism of jasmonate inhibits gibberellins signaling in rice, we performed transcriptional profiling of wild type nipponbare and mutant coi1-13 plants on a global scale using the Affymetrix GeneChip Rice Genome Array Rice young uppermost internodes were harvested and three biological repeats were performed on Nippombare (wild-type) and coi1-13 (mutant), respectively.

2011-12-01 | E-GEOD-29577 | biostudies-arrayexpress

Oryza sativa strain:Nipponbare

Project description:Transcriptome analysis of rice DPD1 mutant under +P or -P condition

| PRJDB17681 | ENA

Oryza sativa strain:Nipponbare Transcriptome or Gene expression

Project description:To better understand the complex mechanisms regulating Pi homeostasis in rice (Oryza sativa L. cv. Nipponbare), a time course experiment was performed, where pre-germinated seedlings were grown hydroponically for two weeks on Pi-sufficient medium (0.32 mM Pi), before transferring half of the plants to Pi-deficient solution (0 mM Pi) for 21 days (d). After three weeks of Pi-starvation treatment, half of these plants where then re-supplied with Pi sufficient media for up to 24 hours (h). In total, nine time points were selected in order to cover short and long term responses to Pi starvation as well as the effects of Pi re-supply on Pi starved plants.

2013-11-25 | E-MTAB-4427 | biostudies-arrayexpress

Oryza sativa strain:Nipponbare, emf2a mutant

Project description:ChIP-seq of H3K27me3 in rice emf2a mutant

| PRJDB10768 | ENA

Oryza sativa strain:Nipponbare

Project description:Si response in root of WT and sss mutant rice

| PRJDB18916 | ENA

Oryza sativa Japonica Group strain:Nipponbare

Project description:Silicon response in rice siet4 mutant

| PRJDB16702 | ENA

Oryza sativa strain:Nipponbare Transcriptome or Gene expression

Project description: Not available

2014-11-04 | E-MTAB-4123 | biostudies-arrayexpress

Oryza sativa cultivar:Nipponbare Transcriptome or Gene expression

Project description:A comprehensive time-course experiment of Pi-starved plants was undertaken, spanning medium (3 and 7 days), and long-term (21 days up to 52 days) Pi deprivation (âPi), as well as both short term (1 and 3 days) and long-term (31 days) recovery. The 52 days time point consisting of 21 days starvation +31 days recovery enabled investigation of the effects of long term resupply on Pi starved plants, and coincided with the emergence of the first panicles and grains. Pre-germinated rice seedlings were grown for 14 days in Pi sufficient conditions (0.32 mM Pi) before being transferred to either Pi sufficient (0.32 mM Pi) or Pi deficient (0 mM Pi) media for 21 days. After 21 days of Pi deficient treatment, half of the plants were either maintained under Pi deficient conditions or re-supplied with Pi (0.32 mM) for 1, 3 or 31 days. To confirm the effectiveness of the Pi starvation and resupply treatments, physiological and molecular analyses were performed.

2015-07-31 | E-MTAB-4334 | biostudies-arrayexpress

RNA sequencing of control and OsADF1/6/9 triple knockout mutant in mature rice anthers (Oryza sativa japonica)

Project description:We created a triple loss-of-function/knockout mutant targeting three rice genes simultaneously. The three selected genes are as follows: OsADF1 (LOC_Os02g44470), OsADF6 (LOC_Os04g46910), and OsADF9 (LOC_Os07g30090). These three ADFs are strongly transcriptional expressed in the rice mature anthers (stages 13) and bi-/tricelluler pollen. The triple mutant of these OsADFs does not produce self-fertilizing seeds due to the short length of the pollen tube (male-sterile). This data is about mature anther transcriptome data about the triple mutant of OsADFs (ADFmT). We sampled mature anther for the analysis.

2024-07-02 | E-MTAB-13557 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data