Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Oryza sativa Japonica Group

ABSTRACT: Genome-wide effect of OSA1 on gene expression

PROVIDER: PRJDB10950 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR260188.fastq.gz	Fastqsanger.gz
	DRR260189.fastq.gz	Fastqsanger.gz
	DRR260190.fastq.gz	Fastqsanger.gz
	DRR260191.fastq.gz	Fastqsanger.gz
	DRR260192.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

Oryza sativa Japonica Group transcriptome sequencing

Project description:Phosphate starvation/sufficient rice seedling, root or shoot Pi-starvation or Pi-sufficient stresses responsible rice genes, including previously unannotated genes were identified by Illumina mRNA-seq technology. 53 million reads from Pi-starvation or Pi-sufficient root or shoot tissues were uniquely mapped to the rice genome, and these included 40574 RAP3 transcripts in root and 39748 RAP3 transcripts in shoot. We compared our mRNA-seq expression data with that from Rice 44K oligomicroarray, and about 95.5% (root) and 95.4% (shoot) transcripts supported by the array were confirmed expression both by the array and by mRNA-seq, Moreover, 11888 (root) and 11098 (shoot) RAP genes which were not supported by array, were evidenced expression with mRNA-seq. Furthermore, we discovered 8590 (root) and 8193 (shoot) previously unannotated transcripts upon Pi-starvation and/or Pi-sufficient.

2012-01-06 | E-MTAB-4302 | biostudies-arrayexpress

Oryza sativa Japonica Group

Project description:Genome-wide gene expression profiling of rice Zhonghua11 and ila1 lamina joint

| PRJNA149021 | ENA

Tiling microarray of Oryza sativa japonica at 46nt resolution

Project description:This experiment was designed to identify transcribed regions of japonica subspecies of the rice genome. A series of high-density oligonucleotide tiling arrays that represent sense and antisense strands of the entire nonrepetitive sequence of all the 12 chromosomes were designed to measure genome-wide transcription. A total of 12253842 36mer oligonucleotide probes positioned every 46 nt on average were used for this purpose. The probes were synthesized via maskless photolithography at a feature density of approximately 389,000 probes per slide. The arrays were hybridized with fluorescence-labeled cDNA reverse-transcribed from equal amounts of four selected poly(A)+ RNA population (seedling root, seedling shoot, panicle, and suspension cultured cells). Keywords: tiling array, genome-wide transcription

2007-02-21 | GSE6996 | GEO

Oryza sativa Japonica Group

Project description:Genome-wide Gene Expression Profiling Associated with Seedling Cold Tolerance Improvement in Japonica Rice Background

| PRJNA167155 | ENA

Oryza sativa Japonica Group

Project description:The Transcriptome or Gene expression of OsINO80

| PRJNA417910 | ENA

Oryza sativa Japonica Group

Project description:Genome-wide DNA methylation profile in mutants of a rice HISTONE DEACETYLASE (HDA705)

| PRJDB6575 | ENA

Oryza sativa Japonica Group

Project description:Structure-seq2: Sensitive and accurate genome-wide profiling of RNA structure in vivo