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Mycolicibacterium fortuitum subsp. fortuitum

ABSTRACT: Complete genome sequence of Mycobacterium fortuitum subsp. fortuitum JCM 6837T, a type strain of human pathogenic mycobacteria showing inducible macrolide resistance.

PROVIDER: PRJDB12810 | ENA |

REPOSITORIES: ENA

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			Action	DRS
		Other
	DRR337680_1.fastq.gz	Fastqsanger.gz
	DRR337681_1.fastq.gz	Fastqsanger.gz
	DRR337681_2.fastq.gz	Fastqsanger.gz

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Project description:Mycolicibacterium fortuitum subsp. fortuitum DSM 46621 = ATCC 6841 = JCM 6387 Genome sequencing and assembly

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Data-dependent acquisition based proteomic analysis of Mycobacterium fortuitum ATCC 6841

Project description:Detection of species-specific proteotypic peptides for accurate and easy characterization of infectious non-tuberculous mycobacteria such as Mycobacterium fortuitum is essential. Therefore, we carried out an in-depth global proteomic experiment using M. fortuitum ATCC 6841 strain followed by a proteome database search and spectral library generation. The lysate was subjected to in-solution proteomic sample preparation and fractionated using an offline C18 StageTip. Each fraction was acquired in technical triplicates using a 180 min data-dependent acquisition (DDA) method in Orbitrap Fusion Tribrid (Thermo Scientific) mass spectrometer. The resulting raw DDA data were searched against the M. fortuitum proteome database using Proteome Discoverer and FragPipe. The resulting peptide spectrum matches were converted into a spectral library using BiblioSpec.

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Mycolicibacterium fortuitum subsp. fortuitum strain:ATCC 6842

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Project description:Biofilm formation by the environmental and clinical contaminant Mycobacterium fortuitum causes economic losses and serious threat to human health, as a consequence of its increasing contribution to nosocomial infections. There are no reports that elucidate physiological adaptations taking place during its planktonic to biofilm transition. The present study was hence carried out considering the global proteome of the mycobacterium. This is the first description of a global proteomic investigation into M. fortuitum biofilm. Scrutiny of biological functions in the two states provided insights into the phenotypic switch, and fundamental pathways associated with M. fortuitum pathobiology.

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