Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bacteria

ABSTRACT: Bacterial community analysis from Cisolok geothermal area using culture independent method

PROVIDER: PRJDB17498 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR530574_1.fastq.gz	Fastqsanger.gz
	DRR530574_2.fastq.gz	Fastqsanger.gz
	DRR530575_1.fastq.gz	Fastqsanger.gz
	DRR530575_2.fastq.gz	Fastqsanger.gz
	DRR530576_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Bacteria

Project description:Ktedonobacterial community in forest soils and quartz rock near geysers in Cisolok geothermal area

| PRJDB17497 | ENA

Bacteria

Project description:Whole genome sequences of bacteria from Cisolok geothermal area, Indonesia

| PRJDB15256 | ENA

Role of cervicovaginal microbiota in genital inflammation

Project description:We performed gene expression analysis using the SCRB-Seq method from cervical and peripheral blood antigen presenting cells that were collected from women with different cervicovaginal bacterial community types.

2015-05-19 | GSE68452 | GEO

Bacteria

Project description:Metabarcoding analysis of bacterial composition in paddy field on Mount Salak using next generation sequencing method

| PRJDB17767 | ENA

Essential oils affect populations of some rumen bacteria as revealed by microarray analysis

Project description:Origanum oil (ORO), garlic oil (GAO), and peppermint oil (PEO) were shown to effectively lower methane production, decrease abundance of methanogens, and change abundances of several bacterial populations important to feed digestion in vitro. In this study, the impact of these essential oils (EOs, at 0.50 g/L), on the rumen bacterial community composition was further examined using the recently developed RumenBactArray.

2014-10-23 | GSE62624 | GEO

Highly multiplexed spatial transcriptomics in bacteria

Project description:Single-cell decisions made in complex environments underlie many bacterial phenomena. Image-based, transcriptomics approaches offer an avenue to study such behaviors, yet these approaches have been hindered by the massive density of bacterial mRNA. To overcome this challenge, we combine 1000-fold volumetric expansion with multiplexed error robust fluorescence in situ hybridization (MERFISH) to create bacterial-MERFISH, a method enabling high-throughput, spatially resolved profiling of thousands of operons within individual bacteria. Using bacterial-MERFISH, we dissect the response of E. coli to carbon starvation, systematically map subcellular RNA organization, and chart the adaptation of B. thetaiotaomicron to micron-scale niches in the mammalian colon. We envision bacterial-MERFISH could prove useful in the study of bacterial single-cell decisions made in diverse, spatially structured, and native environments.

2024-11-12 | GSE268480 | GEO

Bacteria in the sludge

Project description:Anaerobic digestion bacterial community analysis

| PRJNA832527 | ENA

Identification of Gram-positive bacteria using BC-GP assay

Project description:Signal intensities of BC-GP array for 105 speimens The Verigene Gram-Positive Blood Culture (BC-GP) nucleic acid assay is an automated microarray-based test, which can detect 12 Gram-positive bacterial genes and 3 resistance determinants using blood culture broths. We investigated signal intensities of microarray spots, and reclassified undetermined results where the automated system failed and various errors were called in blood culture specimens and spiked samples.

2014-05-30 | GSE57245 | GEO

Bacteria

Project description:Bacterial community structure1

| PRJDB17733 | ENA

SMRT-Cappable-seq reveals complex operon variants in bacteria

Project description:We develop a method SMRT-Cappable-seq that combines the isolation of unfragmented bacterial primary transcripts with the longread sequencing using PacBio. This method allows the identification and phasing of the transcrription start sites and the termination sites, thereby revealing the operon structure and the regulation of gene experession in bacteria. Applied to E.coli, our method results in an unprecedented definition of the transcriptome with 34% of the known operons from RegulonDB database being extended by at least one gene, and identifies a total of 2300 operons from which around 900 are novel.

2018-07-22 | GSE117273 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data