Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Soil metagenome

ABSTRACT: Diversity of ammonia oxidizing bacteria and archaea in soils at moss-polar willow vegetation in Ny-?lesund, Svalbard

PROVIDER: PRJDB3499 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR029873.fastq.gz	Fastqsanger.gz
	DRR029874.fastq.gz	Fastqsanger.gz
	DRR029875.fastq.gz	Fastqsanger.gz
	DRR029876.fastq.gz	Fastqsanger.gz
	DRR029877.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Nitrosopumilus maritimus SCM1: exponential phase control vs. 24 hours starvation vs. 24 hours recovery after starvation

Project description:Transcriptional profiling of marine ammonia oxidizing archaea Nitrosopumilus maritimus cells comparing exponential phase control cells with cells under 24 hours starvation and with cells under recovery after 24 hours starvation. Goal was to determine the effects of global transcriptional responses of N. maritimus cells under ammonia starvation and recovery conditions.

2017-11-01 | GSE103848 | GEO

Project description:Ammonia-oxidizing Archaea

| PRJNA673573 | ENA

Project description:The diversity of ammonia-oxidizing archaea in rhizosphere soils

| PRJNA1103381 | ENA

freshwater sediment metagenome

Project description:ammonia-oxidizing archaea and ammonia-oxidizing bacteria sequencing

| PRJNA525546 | ENA

Nitrosopumilus maritimus SCM1

Project description:Autotrophic ammonia-oxidizing Archaea

| PRJNA19265 | ENA

Project description:H ammonia-oxidizing archaea

| PRJNA644484 | ENA

Project description:L ammonia-oxidizing archaea

| PRJNA644490 | ENA

Project description:Ammonia-oxidizing archaea sequencing

| PRJNA985879 | ENA

marine metagenome

Project description:Ammonia-oxidizing uncultured archaea

| PRJNA427481 | ENA

Evaluation of Edaphic Microbial Ammonium Oxidizing Communities during a Yellow Potato Cycle Culture

Project description:This study evaluated the ammonium oxidizing communities (COA) associated with a potato crop (Solanum phureja) rhizosphere soil in the savannah of Bogotá (Colombia) by examining the presence and abundance of amoA enzyme genes and transcripts by qPCR and next-generation sequence analysis. amoA gene abundance could not be quantified by qPCR due to problems inherent in the primers; however, the melting curve analysis detected increased fluorescence for Bacterial communities but not for Archaeal communities. Transcriptome analysis by next-generation sequencing revealed that the majority of reads mapped to ammonium-oxidizing Archaea, suggesting that this activity is primarily governed by the microbial group of the Crenarchaeota phylum. In contrast,a lower number of reads mapped to ammonia-oxidizing bacteria.

2018-08-06 | GSE71824 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data