Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Nostoc sp. NIES-3756

ABSTRACT: Complete genome sequence of Nostoc sp. NIES-3756

PROVIDER: PRJDB4341 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR054720_1.fastq.gz	Fastqsanger.gz
	DRR054720_2.fastq.gz	Fastqsanger.gz
	DRR054721_1.fastq.gz	Fastqsanger.gz
	DRR054721_2.fastq.gz	Fastqsanger.gz
	GCA_001548375.1_sequence_report.txt	Txt

Items per page:

1 - 5 of 5

Similar Datasets

Transcriptomic response of Nostoc sp. MG11 under desiccation stress

Project description:To identify the mechanisms of the adaptation to terrestrial ecosystems, an RNA-seq based transcriptome analysis was conducted on a desiccation resistant cyanobacterium, Nostoc sp. MG11.

2022-07-14 | GSE207827 | GEO

Nostoc punctiforme NIES-2108 isolate:NIES-2108

Project description:Nostoc punctiforme NIES-2108 from xenic culture. Genome and Assembly

| PRJNA319602 | ENA

Leptolyngbya sp. NIES-3755

Project description:Complete genome sequence of Leptolyngbya sp. NIES-3755

| PRJDB4349 | ENA

Nostoc minutum NIES-26 isolate:NIES-26

Project description:Nostoc minutum NIES-26 from xenic culture. Genome sequencing and assembly

| PRJNA319601 | ENA

Effect of deletion of all0854 on gene expression of Nostoc sp. PCC 7120

Project description:To investigate the function of All0854, we constructed the all0854 deletion mutant Mall0854, in which all0854 was knocked out by CRISPER-cpf1. We then performed gene expression profiling analysis using data obtained from RNA-seq of wide type Nostoc sp. PCC 7120 and Mall0854.

2023-05-01 | GSE218875 | GEO

Proteogenomic annotation provides new insight into nitrogen metabolism of Nostoc sp. PCC 7120

Project description:Proteogenomics analysis was employed to refine the genome annotation and provide new insights into nitrogen metabolism of Nostoc sp. PCC 7120.

2021-08-05 | PXD027697 |

Nostoc sp.

Project description:Nostoc sp. Genome sequencing

| PRJNA534312 | ENA

Fischerella sp. NIES-3754

Project description:Genome sequence of Fischerella sp. NIES-3754

| PRJDB4348 | ENA

Nitrogen-regulated antisense transcription in the adaptation to nitrogen deficiency in Nostoc sp. PCC 7120

Project description:Transcriptomic analyses using high-throughput methods have revealed abundant antisense transcription in bacteria. Most frequently, antisense transcription is due to the overlap of mRNAs with long 5’ regions or 3’ ends that extend beyond the coding sequence. In addition, antisense RNAs that do not contain any coding sequence are also observed. Nostoc sp. PCC 7120 is a filamentous cyanobacterium that, under nitrogen limitation, behaves as a multicellular organism with division of labor among two different cell types that depend on each other, the vegetative CO2-fixing cells and the nitrogen-fixing heterocysts. Differentiation of heterocysts depends on the global nitrogen regulator NtcA and requires the specific regulator HetR. To identify antisense RNAs potentially involved in heterocyst differentiation we performed an RNA-Seq analysis of cells subjected to nitrogen limitation (either at 9 or 24 hours after nitrogen removal) and analyzed the results in combination with a genome-wide set of nitrogen-regulated transcriptional start sites and a prediction of transcriptional terminators. Our analysis resulted in the definition of a transcriptional map including more than 4,000 transcripts, 65% of them in antisense orientation to other transcripts. In addition to overlapping mRNAs we identified nitrogen-regulated non-coding antisense RNAs transcribed from NtcA-dependent or HetR-dependent promoters.

2023-06-27 | GSE212705 | GEO

Nostoc sp. 2RC

Project description:Nostoc sp. 2RC Genome sequencing

| PRJNA501859 | ENA