Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Prunus avium

ABSTRACT: Identification of self-incompatibility modifier in sweet cherry

PROVIDER: PRJDB6734 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR124549_1.fastq.gz	Fastqsanger.gz
	DRR124549_2.fastq.gz	Fastqsanger.gz
	DRR124550_1.fastq.gz	Fastqsanger.gz
	DRR124550_2.fastq.gz	Fastqsanger.gz
	DRR124551_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 276

Similar Datasets

Prunus avium transcriptome profiling

Project description:Profiling of fruit and leaves transcriptomes of cherry cultivars

2019-02-26 | GSE121997 | GEO

Prunus avium

Project description:A hydrogen cyanamide-responsive transcriptome of sweet cherry flower buds from endodormancy to flowering

| PRJNA369332 | ENA

Prunus avium cultivar:Tieton

Project description:Sweet cherry (Prunus avium) cv. Tieton Raw sequencing data

| PRJNA503752 | ENA

Prunus avium

Project description:Integration and demonstration of safe and efficient cultivation technology of sweet cherry in Buwa Village, Weizhou Town, Wenchuan County (Science and Technology Demonstration Village)

| PRJNA1057313 | ENA

Prunus avium

Project description:RNA samples to analyze the transcriptomic responses to GA3 in early- and mid-season varieties before ripening initiation in sweet cherry (Prunus avium) fruits.

| PRJNA683645 | ENA

The detection of Prunus virus F and its distribution in Hungarian sour cherry orchards

Project description:Viromes of sour and sweet cherry trees in Hungarian germ line collections were surveyed using small RNA HTS as an unbiased method. RNA from leaf samples of different cultivars were purified and used to produce seven pools from which small RNA HTS libraries were prepared. The sequenced reads were analyzed using bioinformatic methods to revel the presence of viruses in the samples. Presence of the viruses were validated using RT-PCR.

2024-10-31 | GSE233558 | GEO

Transcriptome analysis of compatible and incompatible pollen-pistil interactions in almond (Prunus dulcis)

Project description:The cultivated almond exhibits self-incompatibility of the gametophytic type regulated by the S-locus, and expressed in pistil (S-RNase) and in pollen (SFB protein). The aim of this study is to clarify the transcription pattern of these 2 S-genes and to identify additional components of the gametophytic self-incompatibility system in almond. With this aim, A2-198 (self compatible) and ITAP-1 (self incompatible) almond selections were used: RNA-seq of pistils of these two accessions both un-pollinated and pollinated with A2-198 pollen were carried out.

2019-06-01 | E-MTAB-6164 | biostudies-arrayexpress

Prunus avium cultivar:Tieton

Project description:Chromosome-scale genome assembly of sweet cherry (Prunus avium L.) cv. Tieton obtained using long-read and Hi-C sequencing

| PRJNA596810 | ENA

Comparative analysis of stylar canal cells transcriptome in clementine mandarin (Citrus clementina)

Project description:Compared to what is known in model species, reproductive biology in citrus is still poorly understood. Although in recent years several efforts have been made to study pollen-pistil interaction and self-incompatibility, little information is available about the molecular mechanisms regulating these processes. We performed microarray analysis for the identification of candidate genes involved in pollen-pistil interaction and self-incompatibility in clementine (Citrus clementina Hort. ex Tan.). The analysis was performed comparing the transcriptome of laser-microdissected stylar canal cells isolated from two clementine genotypes differing for self-incompatibility response (‘Comune’, self-incompatible; and ‘Monreal’, a self compatible mutation of ‘Comune’).

2012-02-15 | GSE33014 | GEO

Molecular investigation of Tuscan sweet cherries sampled over three years: gene expression analysis coupled to metabolomics and proteomics

Project description:Sweet cherry (Prunus avium L.) is a stone fruit widely consumed and appreciated for its organoleptic properties, as well as its nutraceutical potential. We here investigated the characteristics of six non-commercial Tuscan varieties of sweet cherry maintained at the Regional Germplasm Bank of the CNR-IBE in Follonica (Italy) and sampled at maturity over three consecutive years (2016-2017-2018). We adopted an approach merging genotyping and targeted gene expression profiling with metabolomics. To complement the data, a study of the soluble proteomes was also performed on two varieties showing the highest content of phenolics. The results obtained revealed that the highest differences were observed in the expression of genes involved in the phenylpropanoid pathway during the three years and among the varieties, while metabolomics identified the presence of flavanols and proanthocyanidins in highest abundance in the varieties Morellona and Crognola. Finally, proteomics on these two varieties showed differences in proteins involved in stress response, primary metabolism, and cell wall expansion. To the best of our knowledge, this is the first multi-pronged study focused on Tuscan sweet cherry varieties providing insights into the differential abundance of genes, proteins and metabolites.

2021-06-14 | PXD019468 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data