Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Oryza sativa Japonica Group

ABSTRACT: Plasticity of rice plant in response to diverse soil environmental changes

PROVIDER: PRJDB8093 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR172156_1.fastq.gz	Fastqsanger.gz
	DRR172156_2.fastq.gz	Fastqsanger.gz
	DRR172157_1.fastq.gz	Fastqsanger.gz
	DRR172157_2.fastq.gz	Fastqsanger.gz
	DRR172158_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 36

Similar Datasets

Oryza sativa Japonica Group transcriptome sequencing

Project description:Phosphate starvation/sufficient rice seedling, root or shoot Pi-starvation or Pi-sufficient stresses responsible rice genes, including previously unannotated genes were identified by Illumina mRNA-seq technology. 53 million reads from Pi-starvation or Pi-sufficient root or shoot tissues were uniquely mapped to the rice genome, and these included 40574 RAP3 transcripts in root and 39748 RAP3 transcripts in shoot. We compared our mRNA-seq expression data with that from Rice 44K oligomicroarray, and about 95.5% (root) and 95.4% (shoot) transcripts supported by the array were confirmed expression both by the array and by mRNA-seq, Moreover, 11888 (root) and 11098 (shoot) RAP genes which were not supported by array, were evidenced expression with mRNA-seq. Furthermore, we discovered 8590 (root) and 8193 (shoot) previously unannotated transcripts upon Pi-starvation and/or Pi-sufficient.

2012-01-06 | E-MTAB-4302 | biostudies-arrayexpress

Oryza sativa Japonica Group

Project description:Plant root transcriptome profiling of Azospirillum-rice cooperation

| PRJNA254488 | ENA

Oryza sativa Japonica Group

Project description:RNA-Seq analysis of rice under various environmental conditions

| PRJDB2600 | ENA

Rice plants (Oryza sativa var. japonica): WT vs. MIT knockdown plant

Project description:Transcriptional profiling of MIT knockdown plants. MIT is a mitochondrial Fe transporter essential for rice growth and development. The goal was to determine the effects of MIT on global rice gene expression. Control condition experiment, root or shoot of WT vs. MIT knockdown plant. Two replicates each comparison, including a dye swap.

2011-04-07 | E-GEOD-28428 | biostudies-arrayexpress

Oryza sativa,Global proteome,LC-MSMS

Project description:Rice is one of the most important global food crops, and is also a model organism for cereal research 31 . Complete genome sequencing of rice, together with advances in transcriptomics and proteomics, has had a dramatic impact on plant growth and 5 breeding programs 32 . Genomic analysis of DNA methylation in rice has revealed methylation patterns associated with gene bodies and promoters, and the occurrence of high levels of DNA methylation in the centromeric domain 33 . A genome-wide investigation of acetylation in rice revealed that H3K9ac and H3K27ac are mainly enriched at transcription start sites associated with active transcription 34 . Furthermore, global proteome analysis has shown that phosphorylation and succinylation are involved in diverse cellular and metabolic processes 35, 36 . However, despite these considerable advances in our knowledge, additional large-scale analysis of the lysine acetylome in rice is expected to identify many more Kac sites and acetylated proteins in this improtant crop plant. In this study, affinity enrichment and high-resolution LC-MS/MS were used for large-scale analysis of the lysine acetylome in rice variety Nipponbare. In total, 1353 lysine acetylation sites were detected in 866 protein groups in rice seedlings. Proteomic analysis showed that Kac occurs in proteins involved in diverse biological processes with varied cellular functions and subcellular localization.

2017-11-13 | PXD004870 | Pride

Oryza sativa Japonica Group

Project description:Rice global gene expression profile in response to plant hormones

| PRJNA170876 | ENA

Oryza sativa Japonica Group

Project description:Rice plants (Oryza sativa var. japonica): WT vs. MIT knockdown plant

| PRJNA139159 | ENA

Rice plants (Oryza sativa var. japonica): WT vs. MIT knockdown plant

2011-04-07 | GSE28428 | GEO

Oryza sativa Japonica Group

Project description:Host transcriptional reprogramming across diverse strains of the rice bacterial leaf streak pathogen Xanthomonas oryzae pv.oryzicola

| PRJNA280380 | ENA

Oryza sativa Japonica Group

Project description:Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress.

| PRJNA259865 | ENA