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Oryza sativa Japonica Group

ABSTRACT: RNA-Seq analysis of rice under various environmental conditions

PROVIDER: PRJDB2600 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	DRR006527.fastq.gz	Fastqsanger.gz
	DRR006528.fastq.gz	Fastqsanger.gz
	DRR006529.fastq.gz	Fastqsanger.gz
	DRR006530.fastq.gz	Fastqsanger.gz
	DRR006531.fastq.gz	Fastqsanger.gz

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Project description:The small RNAs presented here were produced as a preliminary exploration of small RNAs in rice, and as such, various tissues and stress conditions were sampled. Small RNAs present in these samples were all mapped to the rice genome TIGR version 5. The total number of distinct mapped sequences are 12879 for Run 1 and 88508 for Run 2. The total number of sequence reads were respectively 70406 and 191682. The datasets contain Oryza sativa var Nipponbar endogenous small RNA sequences in the size range 18 to 34 nt. Plants were grown in a Conviron Environmental Chamber at high light intensity using both high pressure sodium and metal halide lamps for 10.5 hr at 28 degrees C and for 13.5 hr at 26 degrees C in the dark. RNA was extracted from rice tissues at various stages of development and under different abiotic and biotic stresses. The small RNAs presented here were all mapped to the rice genome TIGR version 5. The total number of distinct mapped sequences are 12879 for Run 1 and 88508 for Run 2. The total number of sequence reads were respectively 70406 and 191682.

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