Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Biocathode metagenome

ABSTRACT: 16S rRNA gene amplicon sequences of bacteria and archaea associated with biocathodes developped at different set potentials

PROVIDER: PRJDB8094 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR172022.fastq.gz	Fastqsanger.gz
	DRR172023.fastq.gz	Fastqsanger.gz
	DRR172024.fastq.gz	Fastqsanger.gz
	DRR172025.fastq.gz	Fastqsanger.gz
	DRR172026.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

biocathode metagenome

Project description:16S rRNA gene amplicon sequences of thermophilic electromethanogenic biocathodes

| PRJDB8998 | ENA

biocathode metagenome

Project description:16S rRNA gene amplicon sequences of bacteria and archaea associated with cathodes modeified with graphene oxide and/or poly(3,4-ethylenedioxythiophene)

| PRJDB8893 | ENA

Functional characterization of microbial communities from glacial ecosystems

Project description:Glaciers are populated by a large number of microorganisms including bacteria, archaea and microeukaryotes. Several factors such as solar radiation, nutrient availability and water content greatly determine the diversity and abundance of these microbial populations, the type of metabolism and the biogeochemical cycles. In order to study their metabolic potentials, samples of glacial ice were taken from several glacial ecosystems. Microorganisms were analyzed by a polyphasic approach that combines a set of -omic techniques: 16S rRNA sequencing, culturomics and metaproteomics. This combination provides key information about diversity and functions of microbial populations, especially in rare habitats. Several whole essential proteins and enzymes related to metabolism and energy production, recombination and translation were found that demonstrate the existence of cellular activity at subzero temperatures.

2023-03-11 | PXD033406 | Pride

Functional characterization of microbial communities from glacial ecosystems

2023-03-11 | PXD033535 | Pride

biocathode metagenome

Project description:16S rRNA gene amplicon sequences of biocathode microbiotas of a hybrid microbial-photoelectrochemical system

| PRJDB6131 | ENA

Quantification of mock microbial communities with metagenomes, 16S rRNA gene amplicons and metaproteomics

Project description:In this study we developed metaproteomics based methods for quantifying taxonomic composition of microbiomes (microbial communities). We also compared metaproteomics based quantification to other quantification methods, namely metagenomics and 16S rRNA gene amplicon sequencing. The metagenomic and 16S rRNA data can be found in the European Nucleotide Archive (Study number: PRJEB19901). For the method development and comparison of the methods we analyzed three types of mock communities with all three methods. The communities contain between 28 to 32 species and strains of bacteria, archaea, eukaryotes and bacteriophage. For each community type 4 biological replicate communities were generated. All four replicates were analyzed by 16S rRNA sequencing and metaproteomics. Three replicates of each community type were analyzed with metagenomics. The "C" type communities have same cell/phage particle number for all community members (C1 to C4). The "P" type communities have the same protein content for all community members (P1 to P4). The "U" (UNEVEN) type communities cover a large range of protein amounts and cell numbers (U1 to U4). We also generated proteomic data for four pure cultures to test the specificity of the protein inference method. This data is also included in this submission.

2017-05-12 | PXD006118 | Pride

biocathode metagenome

Project description:Methanobacterium dominated biocathodes

| PRJNA256170 | ENA

Chronic Strongyloides stercoralis infection increases Ruminococcus torques group and alter microbiome proteome in ivermectin treatment

Project description:The impact of mono-chronic S. stercoralis infection on the gut microbiome and microbial activities in infected participants was explored. The 16S rRNA gene sequencing of a longitudinal study with 2 sets of human fecal was investigated. Set A, 42 samples were matched, and divided equally into positive (Pos) and negative (Neg) for S. stercoralis diagnoses. Set B, 20 samples of the same participant in before (Ss+PreT) and after (Ss+PostT) treatment was subjected for 16S rRNA sequences and LC-MS/MS to explore the effect of anti-helminthic treatment on microbiome proteomes.

2023-11-07 | PXD037975 | JPOST Repository

Metaproteomics of Optimal vs Suboptimal Biocathode (MCL)

Project description:Metaproteomics of graphite cloth biocathodes at different potential was performed.

2015-08-26 | PXD001590 | Pride

aquatic metagenome

Project description:Bacteria 16S rRNA sequences

| PRJNA658717 | ENA