Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Escherichia coli strain:field strain

ABSTRACT: CMY-2 producing third generation cephalosporin resistant E. coli

PROVIDER: PRJDB8169 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR184230_1.fastq.gz	Fastqsanger.gz
	DRR184230_2.fastq.gz	Fastqsanger.gz
	DRR184231_1.fastq.gz	Fastqsanger.gz
	DRR184231_2.fastq.gz	Fastqsanger.gz
	DRR184232_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 332

Similar Datasets

Escherichia coli

Project description:Third generation cephalosporin resistant Escherichia coli (CREC) genome sequencing

| PRJNA862705 | ENA

Project description:WGS analysis of third-generation cephalosporin resistant Escherichia coli

| PRJNA844174 | ENA

Characterisation of proteome of a novel Escherichia coli strain exhibiting mucoviscous phenotype.

Project description:Protein expression by E. coli 26561 during the late-exponential phase of cultures under anaerobic conditions was examined. E. coli 26561 is a multidrug resistant (MDR) and shows an unusual hyper-mucoviscous phenotype. Resistance includes ESBL (CTX-M-14) and proteome was determined with and without exposure to sub-MIC concentrations of the 3rd generation cephalosporin ceftazidime. Ceftazidime exposure was at two sub-MIC levels, specifically 0.25x MIC (samples 5-7), 0.5x MIC (samples 8 - 10); samples 1-4 provided the unexposed Control. Both whole and phospho-enriched fractions for each sample were analysed. Quantification of peptides was assessed using 10-plex TMT labelling in conjunction with an Orbitrap Fusion Tribrid. Raw data produced by the Orbitrap were processed using Max Quant 1.5.4.7 using the included Andromeda search engine. Peptides were searched against our own database of E. coli 26561 proteins which was produced from a hybrid assembly of our reads obtained from MiSeq and PacBio sequencing platforms.

2018-08-22 | PXD008339 | Pride

Klebsiella pneumoniae

Project description:Third generation cephalosporin-resistant Klebsiella pneumoniae isolates

| PRJNA721894 | ENA

Escherichia coli

Project description:fluoroquinolones and third-generation cephalosporins resistant Escherichia coli strains

| PRJNA628558 | ENA

Escherichia coli

Project description:3rd generation cephalosporin resistant Esherichia coli from diseased dogs and cats

| PRJDB12460 | ENA

Construction of an artificial diploid Escherichia coli using a CRISPR-based chromosome-doubling technique

Project description:we designed a CRISPR-based chromosome-doubling technique to construct an artificial diploid Escherichia coli cell. The stable diploid E. coli was confirmed by quantitative PCR and third-generation genome sequencing.

2022-12-29 | GSE192799 | GEO

Project description:third-generation cephalosporin-resistant Enterobacteriaceae in a neonatal intensive care unit

| PRJNA954276 | ENA

Project description:WGS-based surveillance of third-generation cephalosporin-resistant Escherichia coli from bloodstream infections in Denmark

| PRJEB20792 | ENA

Project description:3rd generation cephalosporin resistant, uropathogenic E. coli WGS

| PRJNA891712 | ENA