Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arabidopsis thaliana strain:Col-0

ABSTRACT: Mutational analysis for acute and chronic gamma irradiation in Arabidopsis

PROVIDER: PRJDB8649 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR187996_1.fastq.gz	Fastqsanger.gz
	DRR187996_2.fastq.gz	Fastqsanger.gz
	DRR187997_1.fastq.gz	Fastqsanger.gz
	DRR187997_2.fastq.gz	Fastqsanger.gz
	DRR187998_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 124

Similar Datasets

Genome-wide profiling of gamma-ray-responsive transcriptomes from Arabidopsis thaliana ecotype Col-0

Project description:To analyze the genes of which their expressions are modulated by gamma irradiation, we performed the whole genome expression microarray profiling by comparing normal whole seedlings of Arabidopsis thaliana as control with those of gamma irradiated as test sample.

2019-06-30 | GSE116647 | GEO

Arabidopsis thaliana

Project description:Arabidopsis CAF-1 depletion / gamma-irradiation

| PRJNA96679 | ENA

Arabidopsis thaliana Col-0 inflorescence small RNAs

Project description:Small RNA sequences from Arabidopsis thaliana Col-0 inflorescence tissues of three biological replicates. The data were analyzed to identify non-templated nucleotides in Arabidopsis small RNAs.

2016-05-18 | GSE79119 | GEO

RNAseq of Arabidopsis thaliana Col-0 inflorescences

Project description:Paired-end Illumina RNA sequencing of Arabidopsis thaliana Col-0 inflorescences

2016-11-14 | GSE74717 | GEO

Arabidopsis thaliana

Project description:Mutational analysis of gamma-irradiated Arabidopsis seedlings

| PRJDB15059 | ENA

Arabidopsis thaliana Col-0 Al stress 6hrs

Project description:Transcriptional profiling of roots in Arabidopsis Col-0 with 10 µM AlCl3 6hrs vs w/o AlCl3 6hrs

2014-10-11 | GSE62238 | GEO

RNA-seq of Arabidopsis thaliana Col-0 siliques

Project description:Paired-end Illumina RNA sequencing of Arabidopsis thaliana Col-0 siliques.

2016-11-16 | GSE89617 | GEO

Mapping QTLs for 15 morpho-metric traits in <i>Arabidopsis thaliana</i> using Col-0 × Don-0 population.

Project description:Genome wide quantitative trait loci (QTL) mapping was conducted in Arabidopsis thaliana using F2 mapping population (Col-0 × Don-0) and SNPs markers. A total of five linkage groups were obtained with number of SNPs varying from 45 to 59 per linkage group. The composite interval mapping detected a total of 36 QTLs for 15 traits and the number of QTLs ranged from one (root length, root dry biomass, cauline leaf width, number of internodes and internode distance) to seven (for bolting days). The range of phenotypic variance explained (PVE) and logarithm of the odds ratio of these 36 QTLs was found be 0.19-38.17% and 3.0-6.26 respectively. Further, the epistatic interaction detected one main effect QTL and four epistatic QTLs. Five major QTLs viz. Qbd.nbri.4.3, Qfd.nbri.4.2, Qrdm.nbri.5.1, Qncl.nbri.2.2, Qtd.nbri.4.1 with PVE > 15.0% might be useful for fine mapping to identify genes associated with respective traits, and also for development of specialized population through marker assisted selection. The identification of additive and dominant effect QTLs and desirable alleles of each of above mentioned traits would also be important for future research.

| S-EPMC7196571 | biostudies-literature

Artificial Autopolyploidization Modifies the Tricarboxylic Acid Cycle and GABA Shunt in Arabidopsis thaliana Col-0.

Project description:Autopolyploidy is a process whereby the chromosome set is multiplied and it is a common phenomenon in angiosperms. Autopolyploidy is thought to be an important evolutionary force that has led to the formation of new plant species. Despite its relevance, the consequences of autopolyploidy in plant metabolism are poorly understood. This study compares the metabolic profiles of natural diploids and artificial autotetraploids of Arabidopsis thaliana Col-0. Different physiological parameters are compared between diploids and autotetraploids using nuclear magnetic resonance (NMR), elemental analysis (carbon:nitrogen balance) and quantitative real-time PCR (qRT-PCR). The main difference between diploid and autotetraploid A. thaliana Col-0 is observed in the concentration of metabolites related to the tricarboxylic acid cycle (TCA) and ?-amino butyric acid (GABA) shunt, as shown by multivariate statistical analysis of NMR spectra. qRT-PCR shows that genes related to the TCA and GABA shunt are also differentially expressed between diploids and autotetraploids following similar trends as their corresponding metabolites. Solid evidence is presented to demonstrate that autopolyploidy influences core plant metabolic processes.

| S-EPMC4876396 | biostudies-literature

Arabidopsis thaliana

Project description:Expression data from Arabidopsis leaves after gamma irradiation of 200 Gy

| PRJNA188202 | ENA