Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Methanosarcina barkeri JCM 10043

ABSTRACT: Genome sequencing of Methanosarcina barkeri JCM 10043

PROVIDER: PRJDB882 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	BBEF01.dat.gz	Other
	BBEF01.fasta.gz	Fasta.gz
	BBEF01.master.dat	Other
	DRR017773.fastq.gz	Fastqsanger.gz
	BBEF01.dat.gz	Other

Items per page:

1 - 5 of 5

Similar Datasets

Methanosarcina barkeri

Project description:Methanosarcina barkeri Raw sequence reads

| PRJNA1046004 | ENA

Methanosarcina barkeri

Project description:Methanosarcina barkeri-D4 Raw sequence reads

| PRJNA1046011 | ENA

Methanosarcina barkeri

Project description:Methanosarcina barkeri-D8 Raw sequence reads

| PRJNA1046013 | ENA

Transcription profiling by array of Desulfovibrio vulgaris during the change from syntrophic growth with Methanosarcina barkeri to sulfidogenic metabolism

Project description:Global transcriptomics analysis of the Desulfovibrio vulgaris change from syntrophic growth with Methanosarcina barkeri to sulfidogenic metabolism

2010-07-03 | E-MTAB-304 | biostudies-arrayexpress

Genetic, Biochemical, and Molecular Characterization of Methanosarcina barkeri Mutants Lacking Three Distinct Classes of Hydrogenase

Project description:Hydrogenases are a critical component of H2-dependent energy-conservation pathways in Methanosarcina barkeri. To allow phenotypic analysis of the hydrogenases, we constructed mutants lacking the frhADGB, freAEGB, vhtGACD, vhxGAC and echABCDEF operons, individually and in all possible combinations. In addition to measuring the effect of each deletion on growth, methane production, and hydrogenase activity, the effect on gene expression was measured by RNA sequencing to detect potential transcriptional regulation by the hydrogenases.

2018-01-31 | GSE98441 | GEO

Methanosarcina barkeri str. Fusaro

Project description:Pyr+ Methanosarcina barkeri Fusaro

| PRJNA275150 | ENA

Transcriptomic profiles of M. barkeri Fusaro DSMZ804 and Pyr+ strains

Project description:The goal of this work was to elucidate the mechanism by which pyruvate is utilized as a substrate in a mutant strain of Methanosarcina barkeri Fusaro. In this study, using RNAseq we gained insight into how the mutant strain modulate its transcriptional profile in order to use pyruvate as a substrate. In addition, we obtained information on how methanogens respond to pyruvate at the transcriptional level. The mRNA from of Methanosarcina barkeri Fusaro DSMZ804 and Pyr+ strains grown on a variety of substrates (methanol, acetate, methanol-acetate, methanol-pyruvate, methanol-pyruvate-acetate) were harvested sequenced and mapped to M. barkeri genome. Pairwise comparisons between two cell lines of the Pyr+ strain and the DSMZ 804 strain were performed in all substrates tested.

2015-07-01 | E-GEOD-70370 | biostudies-arrayexpress

Methanosarcina barkeri MS strain:MS

Project description:Methanosarcina barkeri MS strain:MS Raw sequence reads

| PRJNA613292 | ENA

Transcriptomic profiles of M. barkeri Fusaro DSMZ804 and Pyr+ strains

2015-07-01 | GSE70370 | GEO

Methanosarcina mazei JCM 9314

Project description:Genome sequencing of Methanosarcina mazei JCM 9314

| PRJDB784 | ENA