Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-Seq analysis of parental (wild type) and dcl3 mutant lines of Chlamydomonas reinhardtii

ABSTRACT: RNA-Seq analysis of parental (wild type) and dcl3 mutant lines of Chlamydomonas reinhardtii

PROVIDER: PRJEB10671 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR1000640_1.fastq.gz	Fastqsanger.gz
	ERR1000640_2.fastq.gz	Fastqsanger.gz
	ERR1000650_1.fastq.gz	Fastqsanger.gz
	ERR1000650_2.fastq.gz	Fastqsanger.gz
	ERR1000641_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

RNA-seq analysis of parental (wild type) and dcl3 mutant lines of Chlamydomonas reinhardtii

Project description:DCL3 is the main processor of miRNA precursors in Chlamydomonas reinhardtii. Because of that, and in order identify mRNA targets of miRNA-guided slicer complexes, we used RNAseq of the transcriptome in dcl3 mutant and parental lines.

2016-08-28 | E-MTAB-3852 | biostudies-arrayexpress

Small RNA-Seq analysis of parental (wild type) and dcl3 mutant lines of Chlamydomonas reinhardtii

Project description:DCL3 appeared several times in a forward genetic screen meant to isolate genes involved in miRNA-mediated RNA silencing in Chlamydomonas reinhardtii. Because of that, and in order to define the role of DCL3 in the processing of small RNAs on a genome-wide basis, we sequence the small RNA transcriptome of dcl3 mutant and parental lines.

2016-02-01 | E-MTAB-3851 | biostudies-arrayexpress

Small RNA-Seq analysis of parental (wild type) and dcl3 mutant lines of Chlamydomonas reinhardtii

Project description:Small RNA-Seq analysis of parental (wild type) and dcl3 mutant lines of Chlamydomonas reinhardtii

| PRJEB10672 | ENA

Small RNAs in Chlamydomonas reinhardtii

Project description:RNA populations in Chlamydomonas reinhardtii Keywords: Highly parallel pyrosequencing

2007-05-16 | GSE7308 | GEO

Expression analysis of Chlamydomonas reinhardtii exposed to silver

Project description:Chlamydomonas reinhardtii exposed to various concentrations of silver

2013-10-01 | GSE48677 | GEO

Small RNAs in Chlamydomonas reinhardtii

Project description:RNA populations in Chlamydomonas reinhardtii Keywords: Highly parallel pyrosequencing Small RNAs were prepared from Chlamydomonas reinhardtii total extracts,ligated to a 3' adaptor and a 5' acceptor sequentially, and then RT-PCR amplified. PCR products were reamplified using a pair of 454 cloning primers and provided to 454 Life Sciences (Branford, CT) for sequencing. For technical details, see Tao Zhao, Guanglin Li, Shijun Mi, Shan Li, Gregory J. Hannon, Xiu-Jie Wang, and Yijun Qi. 2007. A Complex System of Small RNAs in the Unicellular Green Alga Chlamydomonas reinhardtii. Genes & Development

2007-05-15 | E-GEOD-7308 | biostudies-arrayexpress

RNA-Seq expression profiling of srta mutant and WT strains of Chlamydomonas reinhardtii

Project description:Two strains of the green alga, Chlamydomonas reinhardtii, were selected for high expression of transgenes. These strains, called UVM4 and UVM11, were found to both have unique mutations in the SRTA gene (Cre10.g462200). In this study, the basal transcriptome of these two strains was compared to that of their WT parental strain, Elow47, to identify what effects, if any, the srta mutation has on the transcriptome. Additionally, two SRTA complemented strains in a UVM11 background (UVM11-C1 and UVM11-C9) were included for comparison.

2020-10-23 | GSE128981 | GEO

Endogenous small RNAs from Chlamydomonas reinhardtii strain J3(mt-) vegetative cells

Project description:endogenous small RNAs from Chlamydomonas reinhardtii strain J3(mt-) vegetative cells Keywords: High throughput 454 small RNA sequencing

2007-06-04 | GSE7575 | GEO

Expression analysis of Chlamydomonas reinhardtii exposed to silver

Project description:Chlamydomonas reinhardtii exposed to various concentrations of silver For this experiment,C. reinhardtii were exposed to (4) different concentrations of silver, as biological triplicates

2013-10-01 | E-GEOD-48677 | biostudies-arrayexpress

Chlamydomonas reinhardtii transcriptional responses to cerium dioxide nanoparticles

Project description:Agilent gene expression microarrays (Bham Chlamydomonas reinhardtii Agilent-029192 15k v1) were used to profile transcriptional changes afeter exposure of Chlamydomonas reinardtii algae to cerium dioxide nanoparticles.

2014-09-01 | E-MTAB-2454 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data