Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Globodera pallida genomic sequencing

ABSTRACT: Sequencing different worm populations of Globodera pallida for assembly and analysis.

PROVIDER: PRJEB123 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	CBXT01.dat.gz	Other
	CBXT01.fasta.gz	Fasta.gz
	CBXT01.master.dat	Other
	CBXT01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Globodera pallida genomic sequencing

Project description:Globodera pallida genomic sequencing

| PRJEB2242 | ENA

Globodera pallida

Project description:Globodera pallida overview

| PRJNA714713 | ENA

Globodera pallida transcriptomics

Project description:As part of the Globodera pallida (potato cyst nematode) genome project weare profiling the transcriptome of the parasite across its life cycle usingRNA-Seq. . This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/

2012-11-28 | E-ERAD-55 | biostudies-arrayexpress

Globodera pallida

Project description:Genomic Analyses of Globodera pallida, A Quarantine Agricultural Pathogen in Idaho

| PRJNA679610 | ENA

RNAseq of gall-enriched tissue of Solanum tuberosum infected by Globodera pallida

Project description:We compared the gene expression of Solanum tuberosum genotype SH infected with either Globodera pallida D383, E400 or mock infected. After we (mock)-infected the plants we collected gall-enriched tissue 3 and 6 days post infection. The transcriptomes were measured using RNA-seq. The aim of the experiment was to determine how the plant immune response developed after activation of the resistance gene Gpa2 by D383, as E400 is able to overcome that resistance.

2022-04-30 | E-MTAB-11646 | biostudies-arrayexpress

Globodera pallida isolate:Newton

Project description:Globodera pallida isolate:Newton Genome sequencing and assembly

| PRJNA702104 | ENA

Globodera pallida strain:D383

Project description:Globodera pallida strain:D383 Genome sequencing and assembly

| PRJNA764088 | ENA

Gene expression in populations of the potato cyst nematode Globodera pallida in diapause or quiescence following hydration or exposure to tomato root diffusate

Project description:Plant-parasitic nematodes (PPN) need to be adapted to survive in the absence of a suitable host or in hostile environmental conditions. Various forms of developmental arrest (including desiccation, cryopreservation, hatching inhibition and dauer stages) are used by PPN in order to survive these conditions and spread to other areas. Potato cyst nematodes (PCN) (Globodera pallida and G. rostochiensis) are frequently in a dessicated state unhatched nematodes within the egg dispersal unit inside the cyst. Long term survival seems to be associated primarily with species that have a very restricted host range which requires surviving unhatched in the absence of the host for extended periods of time. This paper shows fundamental changes in the response of quiescent and diapaused eggs of G.pallida to hydration and following exposure to tomato root diffusate using microarray gene expression analysis from a broad set of genes. Surprisingly, many unique genes were activated in the population of diapaused eggs. Transport activity was activated in both quiescent and diapaused eggs; however, the transport function genes were very different between them. Hydrated quiescent and diapaused eggs were markedly different indicating differences in adaptation for long term survival.

2016-02-01 | E-MTAB-3824 | biostudies-arrayexpress

Selection for virulence in the potato cyst nematode Globodera pallida.

Project description:Selection for virulence against resistance in the potato cyst nematode Globodera pallida.

| PRJEB41175 | ENA

RNAseq of gall-enriched tissue of Solanum tuberosum infected by Globodera pallida

Project description:RNAseq of gall-enriched tissue of Solanum tuberosum infected by Globodera pallida

| PRJEB52340 | ENA