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Moose rumen microbiota

ABSTRACT: Shotgun metagenomics of moose rumen

PROVIDER: PRJEB12797 | ENA |

REPOSITORIES: ENA

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			Action	DRS
		Other
	ERR1278072_1.fastq.gz	Fastqsanger.gz
	ERR1278072_2.fastq.gz	Fastqsanger.gz
	ERR1278073_1.fastq.gz	Fastqsanger.gz
	ERR1278073_2.fastq.gz	Fastqsanger.gz

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Metagenome and Viral Interrogation of a Moose Rumen Microbial Community

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The mechanism of promoting proliferation of rumen epithelial cells in Tan sheep by adding succinate to the diet based on the interaction between rumen microbiota and host.

Project description:A healthy rumen is crucial for normal growth and improved production performance of ruminant animals. Rumen microbes participate in and regulate rumen epithelial function, and the diverse metabolites produced by rumen microbes are important participants in rumen microbe-host interactions. SCFAs, as metabolites of rumen microbes, have been widely studied, and propionate and butyrate have been proven to promote rumen epithelial cell proliferation. Succinate, as an intermediate metabolite in the citric acid cycle, is a final product in the metabolism of certain rumen microbes, and is also an intermediate product in the microbial synthesis pathway of propionate. However, its effect on rumen microbes and rumen epithelial function has not been studied. It is unclear whether succinate can stimulate rumen epithelial development. Therefore, in this experiment, Chinese Tan sheep were used as experimental animals to conduct a comprehensive analysis of the rumen microbiota community structure and rumen epithelial transcriptome, to explore the role of adding succinate to the diet in the interaction between the rumen microbiota and host.

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Project description:As the unique organ, rumen plays vital roles in providing products for humans, however, the underlying cell composition and interactions with epithelium-attached microbes remain largely unknown. Herein, we performed an integrated analysis in single-cell transcriptome, epithelial microbiome, and metabolome of rumen tissues to explore the differences of microbiota-host crosstalk between newborn and adult cattle models. We found that fewer epithelial cell subtypes and more abundant immune cells (e.g., Th17 cells) in the rumen tissue of adult cattle. Metabolism-related functions and oxidation-reduction process were significantly upregulated in the adult rumen epithelial cell subtypes. The epithelial Desulfovibrio was significantly enriched in the adult cattle. To further clarify the role of Desulfovibrio in host’s oxidation-reduction process, we performed metabolomics analysis of rumen tissues and found that Desulfovibrio showed a high co-occurrence probability with the pyridoxal in the adult cattle compared with newborn ones. The adult rumen epithelial cell subtypes also showed stronger ability of pyridoxal binding. These indicates that Desulfovibrio and pyridoxal likely play important roles in maintaining redox balance in adult rumen. The integrated analysis provides novel insights into the understanding of rumen function and facilitate the future precision improvement of rumen function and milk/meat production in cattle.

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Rumen microbiota

Project description:Rumen microbiota Targeted loci

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Project description:EMG produced TPA metagenomics assembly of the PRJEB12797 data set (Shotgun metagenomics of moose rumen).

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Project description:EMG produced TPA metagenomics assembly of the PRJEB12797 data set (Shotgun metagenomics of moose rumen).

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Project description:EMG produced TPA metagenomics assembly of the PRJEB12797 data set (Shotgun metagenomics of moose rumen).

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Project description:EMG produced TPA metagenomics assembly of the PRJEB12797 data set (Shotgun metagenomics of moose rumen).

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Project description:A total of 14 samples were used, 12 paired rumen and colon samples, and two rumen only samples. DNA was extracted from each sample, and PCR amplified using universal bacterial primers 27F and 1492R. Trends between anatomical location, age and sex were considered.

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