Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Rhodococcus triatomae DSM 44892

PROVIDER: PRJEB15939 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	FNDN01.dat.gz	Other
	FNDN01.fasta.gz	Fasta.gz
	FNDN01.master.dat	Other
	FNDN01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Rhodococcus triatomae strain:DSM 44892 | isolate:DSM 44892

Project description:Rhodococcus triatomae DSM 44892 genome sequencing

| PRJNA331770 | ENA

Rhodococcus triatomae

Project description:Rhodococcus triatomae overview

| PRJNA172477 | ENA

Rhodococcus triatomae NBRC 103116

Project description:Rhodococcus triatomae NBRC 103116 genome sequencing project

| PRJDB305 | ENA

Rhodococcus triatomae BKS 15-14

Project description:Rhodococcus triatomae BKS 15-14 Genome sequencing and assembly

| PRJNA185384 | ENA

Proteome analysis of Actinomycetospora chiangmaiensis DSM 45062 degrading 2-HIBA

Project description:The tertiary branched short-chain 2-hydroxyisobutyric acid (2-HIBA) has been associated with several metabolic diseases and lysine 2-hydroxyisobutyrylation seems to be a common eukaryotic as well as prokaryotic post-translational modification in proteins. In contrast, the underlying 2-HIBA metabolism has thus far only been detected in a few microorganisms, such as the betaproteobacterium Aquincola tertiaricarbonis L108 and the Bacillus group bacterium Kyrpidia tusciae DSM 2912. In these strains, 2-HIBA can be specifically activated to the corresponding CoA thioester by the 2-HIBA-CoA ligase HCL and is then isomerized to 3-hydroxybutyryl-CoA in a reversible and B12-dependent mutase reaction. Here, we demonstrate that the actinobacterial strain Actinomycetospora chiangmaiensis DSM 45062 degrades 2-HIBA and also its precursor 2-methylpropane-1,2-diol via acetone and formic acid by employing a thiamine pyrophosphate-dependent lyase. The corresponding gene is located directly upstream of hcl, which has previously been found only in operonic association with the 2-hydroxyisobutyryl-CoA mutase genes in other bacteria. Heterologous expression of the lyase gene from DSM 45062 in E. coli established a 2-hydroxyisobutyryl-CoA lyase activity in the latter. In line with this, analysis of the DSM 45062 proteome reveals a strong induction of the lyase-HCL gene cluster on 2-HIBA. Acetone is likely degraded via hydroxylation to acetol catalyzed by a MimABCD-related binuclear iron monooxygenase and formic acid appears to be oxidized to CO2 by selenium-dependent dehydrogenases. The presence of the lyase-HCL gene cluster in isoprene-degrading Rhodococcus strains and Pseudonocardia associated with tropical leafcutter ant species points to a role in degradation of biogenic volatile organic compounds.

2020-03-17 | PXD017800 | Pride

Effect of biphenyl, ethylbenzene, and benzoate on Rhodococcus sp. RHA1

Project description:This SuperSeries is composed of the following subset Series: GSE5268: Effects of biphenyl on Rhodococcus sp. RHA1 GSE5269: Effects of ethylbenzene on Rhodococcus sp. RHA1 GSE5270: Effects of benzoate on Rhodococcus sp. RHA1 Refer to individual Series

2010-07-01 | E-GEOD-5280 | biostudies-arrayexpress

Blastocrithidia triatomae

Project description:Blastocrithidia triatomae genome

| PRJNA1011240 | ENA

Rhodococcus EP4 Aromatic Transcriptomics

Project description:Transcriptomics of Rhodococcus EP4 on ethylphenol, propylguiacol and succiate

2018-06-01 | GSE112193 | GEO

Project description:Rhodococcus kroppenstedtii DSM 44908

| PRJEB17097 | ENA

Project description:Rhodococcus pyridinivorans DSM 44555

| PRJEB16436 | ENA