Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Comparative genomics of Chlamydia suis

ABSTRACT: Chlamydia suis demonstrates unprecedented genome diversity, plasticity and mobile antibiotic resistance: comparative genomics of a recent livestock cohort

PROVIDER: PRJEB17986 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR1760470_1.fastq.gz	Fastqsanger.gz
	ERR1760470_2.fastq.gz	Fastqsanger.gz
	ERR1760480_1.fastq.gz	Fastqsanger.gz
	ERR1760480_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 65

Similar Datasets

Chlamydia suis

Project description:Chlamydia suis overview

| PRJNA326293 | ENA

Chlamydia suis

Project description:Chlamydia suis Raw sequence reads

| PRJNA326179 | ENA

Chlamydia suis

Project description:Chlamydia suis Recombinant Raw sequence reads

| PRJNA360547 | ENA

Chlamydia suis

Project description:Rifampicin/Rifamycin resistant Chlamydia suis strains

| PRJNA668464 | ENA

Chlamydia suis

Project description:RifR TetR Chlamydia Suis Recombinants - Method

| PRJNA668469 | ENA

Chlamydia suis MD56

Project description:Chlamydia suis MD56 Genome sequencing and assembly

| PRJNA221336 | ENA

Chlamydia suis strain:R19

Project description:Chlamydia suis strain:R19 Genome sequencing

| PRJNA508518 | ENA

Updating the Proteome of the uncultivable hemotrophic Mycoplasma suis in experimentally infected pigs

Project description:Mycoplasma suis belongs to the hemotrophic mycoplasma (HM) that are associated with acute and chronic anemia in a wide range of livestock and wild animals. The inability to culture HMs in vitro has hindered their characterization at the molecular level. Although genome sequences of eight HMs are available, there is only one study based on genome sequenced data on the proteomic level for HMs, namely M. suis. In the present work, the proteome of M. suis strain KI_3806 during acute infection was extended significantly by applying three different protein extraction methods, 1D SDS-PAGE and LC-MS/MS. A total of 404 of the 795 M. suis KI_3806 proteins (50.8%) of all encoded proteins were identified. Data analysis revealed the expression of 83.7% of the predicted ORFs with assigned functions but also highlights the expression of 179 of 523 (34.2%) hypothetical proteins with unknown functions. Computational analyses identified expressed membrane-associated hypothetical proteins that might be involved in adhesion or host-pathogen interaction. Furthermore, analyses of the expressed transporters indicated the existence of a hexose-6-phosphate-transporter and an ECF transporter. In conclusion, our proteome study provides a further step toward the elucidation of the unique life cycle of M. suis and the establishment of an in vitro culture.

2015-12-17 | PXD002294 | Pride

Mutation Mapping of 40 Streptococcus suis strains

Project description:Streptococcus suis is an important zoonotic pathogen that can cause meningitis and sepsis in both pigs and humans. In this study,we evaluated the genetic difference of 40 Streptococcus suis strains belonging to various sequence types by comparative genomic hybridization to identify genes associated with the variation in pathogenicity using NimbleGen’s tilling microarray platform. Application of Comparative Phylogenomics to Identify Genetic Differences Relating to Pathogenicity of Streptococcus suis

2014-05-20 | GSE40035 | GEO

Mutation Mapping of 31 Streptococcus suis strains

Project description:Identification of Genes and Genomic Islands Correlated with High Pathogenicity through Tilling Microarray-Based Comparative Genomics in S. suis. Streptococcus suis is an important zoonotic pathogen that can cause meningitis and sepsis in both pigs and humans. S. suis isolates have been categorized into groups of different levels of pathogenicity, with sequence type (ST) ST1 clonal complex strains having a higher degree of virulence than other STs. However, the genetic basis of the differences in pathogenicity is still poorly understood. In this study, a comprehensive genomic comparison of 31 S. suis strains from different clinical sources with the genome sequence of the high pathogenicity (HP) strain GZ1 was conducted using NimbleGen’s tilling microarray platform.

2012-08-09 | GSE26052 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data