Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Yersinia enterocolitica biotypes

ABSTRACT: Yersinia enterocolitica biotypes

PROVIDER: PRJEB2087 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR015575_1.fastq.gz	Fastqsanger.gz
	ERR015575_2.fastq.gz	Fastqsanger.gz
	ERR015576_1.fastq.gz	Fastqsanger.gz
	ERR015576_2.fastq.gz	Fastqsanger.gz
	ERR015577_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 14

Similar Datasets

Whole transcriptome sequencing of phage φR1-37 and its host Yersinia enterocolitica

Project description:RNA-sequencing was preformed from RNA isolated from bacteria infected with the bacteriophage. In order to reveal the phage-host interactions between φR1-37 and Yersinia enterocolitica throughout the phage infection cycle, both the transcriptomes were scrutinized during all the stages of infection.

2016-01-22 | GSE77068 | GEO

Comparative genome hybridization of Enteropathogenic Yersinia

Project description:Enteropathogenic Yersinia enterocolitica and Yersinia pseudotuberculosis share many traits in terms of infections they cause, but their epidemiology and ecology seem to differ in many ways. Pigs are the only known reservoir for Y. enterocolitica 4/O:3 strains while Y. pseudotuberculosis strains have been isolated from variety of sources including fresh vegetables and wild animals. A comparative genomic hybridization (CGH) analysis with a DNA microarray based on three Yersinia enterocolitica and four Yersinia pseudotuberculosis genomes was conducted to shed light on genomic differences between the enteropathogenic Yersinia. In total 99 strains isolated from various sources were hybridized and analyzed.

2015-10-01 | GSE67565 | GEO

Yersinia enterocolitica Nottingham

Project description:Yersinia enterocolitica Nottingham

| PRJEB2116 | ENA

Yersinia enterocolitica subsp. enterocolitica

Project description:Yersinia enterocolitica subsp. enterocolitica Genome sequencing and assembly

| PRJNA430492 | ENA

Analysis of differentially expressed proteins in Yersinia enterocolitica-infected HeLa cells

Project description:The purpose of our study was to fill this knowledge gap and to characterize the epithelial cell response to Yersinia enterocolitica infection by label-free proteomic quantification.

2022-02-22 | PXD002634 | Pride

Yersinia enterocolitica

Project description:Yersinia enterocolitica Raw sequence reads

| PRJNA812276 | ENA

Gene expression analysis of Peyers patches after infection of C57BL/6 mice with Yersinia enterocolitica

Project description:Orogastral infection of mice with Yersinia enterocolitical leads to HIF-1 alpha activation.To elucidate whether this HIF-1 alpha activation also results in a HIF-1 dependent gene programming, the transcriptomes from Peyers Patches of uninfected and Yersinia enterocolitica infected mice were analyzed by means of of microarray analyses using Affymetrix GeneChip probe arrays (MG-U74Av2). In total, 288 genes were differentially regulated three day after infection in PP compared with the expression of uninfected control mice. Of these 288 genes, 217 were found to be differentially upregulated and from these, 14 genes ( 6.5% of all upregulated genes) are well described to be regulated via HIF-1. These data indicate that orogatral infection with Y. enterocolitica results in HIF-1 dependent gene programmning Keywords: Time course

2007-11-10 | GSE9558 | GEO

Comparative genomic hybridization of 94 Yersinia enterocolitica strains to identify genetic differences related to pathogenicity

Project description:Yersinia enterocolitica, an important cause of human gastroenteritis generally caused by the consumption of livestock, has traditionally been categorized into three groups with respect to pathogenicity, i.e., nonpathogenic (biotype 1A), low pathogenicity (biotypes 2 to 5), and highly pathogenic (biotype 1B). However, genetic differences that explain variation in pathogenesis and whether different biotypes are associated with specific nonhuman hosts are largely unknown. In this study, we applied comparative phylogenomics (whole-genome comparisons of microbes with DNA microarrays combined with Bayesian phylogenies)to investigate a diverse collection of 94 strains of Y.enterocolitica consisting of 35 human, 35 pig, 15 sheep, and 9 cattle isolates from nonpathogenic, low-pathogenicity, and highly pathogenic biotypes. Analysis confirmed three distinct statistically supported clusters composed of a nonpathogenic clade, a low-pathogenicity clade, and a highly pathogenic clade. Genetic differences revealed 125 predicted coding sequences (CDSs) present in all highly pathogenic strains but absent from the other clades. These included several previously uncharacterized CDSs that may encode novel virulence determinants including a hemolysin, a metalloprotease, and a type III secretion effector protein. Additionally, 27 CDSs were identified which were present in all 47 low-pathogenicity strains and Y.enterocolitica 8081 but absent from all nonpathogenic 1A isolates. Analysis of the core gene set for Y.enterocolitica revealed that 20.8% of the genes were shared by all of the strains, confirming this species as highly heterogeneous, adding to the case for the existence of three subspecies of Y.enterocolitica. Further analysis revealed that Y.enterocolitica does not cluster according to source (host). Data is also available from http://bugs.sgul.ac.uk/E-BUGS-36

2006-06-20 | E-BUGS-36 | biostudies-arrayexpress

Yersinia enterocolitica

Project description:Yersinia enterocolitica Genome sequencing and assembly

| PRJNA877633 | ENA

Yersinia enterocolitica

Project description:Yersinia enterocolitica Genome sequencing and assembly

| PRJNA359203 | ENA