Alpine and Arctic glacier cryoconite ecosystem
Ontology highlight
ABSTRACT:
PROVIDER: PRJEB24565 | ENA |
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| ERR2264280.fastq.gz | Fastqsanger.gz | |||
| ERR2264290.fastq.gz | Fastqsanger.gz | |||
| ERR2264281.fastq.gz | Fastqsanger.gz | |||
| ERR2264291.fastq.gz | Fastqsanger.gz | |||
| ERR2264282.fastq.gz | Fastqsanger.gz |
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Project description:Coupled cryoconite ecosystem structure-function relationships are revealed by comparing bacterial communities in Alpine and Arctic glaciers
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Project description:We investigated the potential contribution of ice-marginal environments to the microbial communities of cryoconite holes, small depressions filled with meltwater that form on the surface of Forni Glacier (Italian Alps). Cryoconite holes are considered the most biologically active environments on glaciers. Bacteria can colonize these environments by short-range transport from ice-marginal environments or by long-range transport from distant areas. We used high throughput DNA sequencing to identify Operational Taxonomic Units (OTUs) present in cryoconite holes and three ice-marginal environments, the moraines, the glacier forefield, and a large (> 3 m high) ice-cored dirt cone occurring on the glacier surface. Bacterial communities of cryoconite holes were different from those of ice-marginal environments and hosted fewer OTUs. However, a network analysis revealed that the cryoconite holes shared more OTUs with the moraines and the dirt cone than with the glacier forefield. Ice-marginal environments may therefore act as sources of bacteria for cryoconite holes, but differences in environmental conditions limit the number of bacterial strains that may survive in them. At the same time, cryoconite holes host a few OTUs that were not found in any ice-marginal environment we sampled, thus suggesting that some bacterial populations are positively selected by the specific environmental conditions of the cryoconite holes.
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Project description:Sources and dynamics of microbial communities in cryoconite on an Alpine glacier
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Project description:Rapid disintegration of alpine glaciers has led to the formation of new terrain consisting of mineral debris colonized by microorganisms. Despite the importance of microbial pioneers in triggering the formation of terrestrial ecosystems, their sources (endogenous versus exogenous) and identities remain elusive. We used 454-pyrosequencing to characterize the bacterial and fungal communities in endogenous glacier habitats (ice, sub-, supraglacial sediments and glacier stream leaving the glacier forefront) and in atmospheric deposition (snow, rain and aeolian dust). We compared these microbial communities with those occurring in recently deglaciated barren soils before and after snow melt (snow-covered soil and barren soil). Atmospheric bacteria and fungi were dominated by plant-epiphytic organisms and differed from endogenous glacier habitats and soils indicating that atmospheric input of microorganisms is not a major source of microbial pioneers in newly formed soils. We found, however, that bacterial communities in newly exposed soils resembled those of endogenous habitats, which suggests that bacterial pioneers originating from sub- and supraglacial sediments contributed to the colonization of newly exposed soils. Conversely, fungal communities differed between habitats suggesting a lower dispersal capability than bacteria. Yeasts putatively adapted to cold habitats characteristic of snow and supraglacial sediments were similar, despite the fact that these habitats were not spatially connected. These findings suggest that environmental filtering selects particular fungi in cold habitats. Atmospheric deposition provided important sources of dissolved organic C, nitrate and ammonium. Overall, microbial colonizers triggering soil development in alpine environments mainly originate from endogenous glacier habitats, whereas atmospheric deposition contributes to the establishment of microbial communities by providing sources of C and N.
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Project description:Insights into biodiversity and trophic webs are important for understanding ecosystem functions. Although the surfaces of glaciers are one of the most productive and biologically diverse parts of the cryosphere, the links between top consumers, their diet and microbial communities are poorly understood. In this study, for the first time we investigated the relationships between bacteria, fungi and other microeukaryotes as they relate to tardigrades, microscopic metazoans that are top consumers in cryoconite, a biologically rich and productive biogenic sediment found on glacier surfaces. Using metabarcoding (16S rDNA for bacteria, ITS1 for fungi, and 18S rDNA for other microeukaryotes), we analyzed the microbial community structures of cryoconite and compared them with the community found in both fully fed and starved tardigrades. The community structure of each microbial group (bacteria, fungi, microeukaryotes) were similar within each host group (cryoconite, fully fed tardigrades and starved tardigrades), and differed significantly between groups, as indicated by redundancy analyses. The relative number of operational taxonomic units (ZOTUs, OTUs) and the Shannon index differed significantly between cryoconite and tardigrades. Species indicator analysis highlighted a group of microbial taxa typical of both fully fed and starved tardigrades (potential commensals), like the bacteria of the genera Staphylococcus and Stenotrophomonas, as well as a group of taxa typical of both cryoconite and fully fed tardigrades (likely part of the tardigrade diet; bacteria Flavobacterium sp., fungi Preussia sp., algae Trebouxiophyceae sp.). Tardigrades are consumers of bacteria, fungi and other microeukaryotes in cryoconite and, being hosts for diverse microbes, their presence can enrich the microbiome of glaciers.
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Project description:Glacier algae, which are photosynthetic microbes growing on ice, considerably reduce the surface albedo of glaciers and accelerate their melting rate. Although the growth of glacier algae can be suppressed by parasitic chytrids, the impact of chytrids on algal populations is still largely unknown. In this study, we described the morphology of the chytrid infecting the glacier alga Ancylonema nordenskioeldii and quantified the prevalence of infection in different habitats on a mountain glacier in Alaska, USA. Microscopic observations revealed three different morphological types of chytrids with distinct rhizoid shapes. Variations in the size of the sporangia were probably because of their different growth stages, indicating that they actively propagated on the glacier. The prevalence of infection did not vary among sites with different elevations but was substantially higher in cryoconite holes (20%) than on ice surfaces (4%) at all sites. This indicates that cryoconite holes are hot spots for chytrid infections of glacier algae, and the dynamics of cryoconite holes might affect the host-parasite interactions between chytrids and the glacier algae, which may in turn alter surface albedo and ice melting.
| S-EPMC9998860 | biostudies-literature
Project description:Aiming to comprehensively survey the potential pollution of an alpine cryoconite (Jamtalferner glacier, Austria), and its bacterial community structure along with its biodegrading potential, first chemical analyses of persistent organic pollutants, explicitly polychlorinated biphenyls (PCBs) and organochlorine pesticides (OCPs) as well as polycyclic aromatic hydrocarbons (PAHs), revealed a significant contamination. In total, 18 PCB congeners were detected by high resolution gas chromatography/mass spectrometry with a mean concentration of 0.8 ng/g dry weight; 16 PAHs with an average concentration of 1,400 ng/g; and 26 out of 29 OCPs with a mean concentration of 2.4 ng/g. Second, the microbial composition was studied using 16S amplicon sequencing. The analysis revealed high abundances of Proteobacteria (66%), the majority representing α-Proteobacteria (87%); as well as Cyanobacteria (32%), however high diversity was due to 11 low abundant phyla comprising 75 genera. Biodegrading potential of cryoconite bacteria was further analyzed using enrichment cultures (microcosms) with PCB mixture Aroclor 1242. 16S rDNA analysis taxonomically classified 37 different biofilm-forming and PCB-degrading bacteria, represented by Pseudomonas, Shigella, Subtercola, Chitinophaga, and Janthinobacterium species. Overall, the combination of culture-dependent and culture-independent methods identified degrading bacteria that can be potential candidates to develop novel bioremediation strategies.
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Project description:Arctic glacier forefields Raw sequence reads
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Project description:Monitoring of plant succession in glacier forelands has so far been restricted to field sampling. In this study, in situ vegetation sampling along a chronosequence between Little Ice Age (LIA) maximum extent and the recent glacier terminus at Jamtalferner in the Austrian Alps is compared to time series of the Normalized Difference Vegetation Index (NDVI) calculated from 13 Landsat scenes (1985-2016). The glacier terminus positions at 16 dates between the LIA maximum and 2015 were analysed from historical maps, orthophotos and LiDAR images. We sampled plots of different ages since deglaciation, from very recent to approx. 150 years: after 100 years, roughly 80% of the ground is covered by plants and ground cover does not increase significantly thereafter. The number of species increases from 10-20 species on young sites to 40-50 species after 100 years. The NDVI increases with the time of exposure from a mean of 0.11 for 1985-1991 to 0.20 in 2009 and 0.27 in 2016. As the increase in ground cover is clearly reproduced by the NDVI (R² ground cover/NDVI 0.84) - even for sparsely vegetated areas -, we see a great potential of satellite-borne NDVI to perform regional characterizations of glacier forelands for hydrological, ecological and hazard management-related applications.
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Project description:Repeating earthquakes are a global phenomenon of tectonic faults. Multiple ruptures on the same fault asperities lead to nearly identical waveforms characteristic for these seismic events. We identify their microseismic counterparts beneath an Alpine glacier, where basal sliding accounts for a significant amount of ice flow. In contrast to tectonic faults, Alpine glacier beds are subject to large variations in sliding velocity and effective normal stresses. This leads to inter- and sub-seasonal variations in released seismic moment from stick-slip asperities, which we explain with the rate-and-state friction formalism. During summer, numerically modelled effective normal stresses at asperities are three times higher than in winter, which increases the local shear resistance by the same factor. Stronger summer asperities therefore tend to form in bed regions well connected to the efficient subglacial drainage system. Moreover, asperities organise themselves into a state of subcriticality, transferring stresses between each other. We argue that this seismic stick-slip behavior has potentially far-reaching consequences for glacier sliding and in particular for catastrophic failure of unstable ice masses.
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