Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Quantum pathogen evolution by integron mediated capture

PROVIDER: PRJEB26079 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR2523100_1.fastq.gz	Fastqsanger.gz
	ERR2523100_2.fastq.gz	Fastqsanger.gz
	ERR2523101_1.fastq.gz	Fastqsanger.gz
	ERR2523101_2.fastq.gz	Fastqsanger.gz
	ERR2523102_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 20

Similar Datasets

Project description:integron

| PRJNA780660 | ENA

Off-target integron activity leads to rapid plasmid compensatory evolution in response to antibiotic selection pressure

Project description:Impact of off-target integron activity on bacteria evolution

| PRJEB52820 | ENA

Insights into the evolution of host association through the isolation and characterization of a human periodontal pathogen, Desulfobulbus oralis

Project description:Insights into the evolution of host association through the isolation and characterization of a human periodontal pathogen, Desulfobulbus oralis

| MSV000081569 | MassIVE

Chromosomal integrons are genetically and functionally isolated units of genomes

Project description:Integrons are genetic elements that enable bacterial adaptation by collecting new genes encoded in integron cassettes (ICs) to create a reservoir of adaptive functions. These cassettes typically lack their own promoters and rely on the integron platform for their expression. Integrons, well-known for spreading antibiotic resistance genes in clinically relevant Gram-negative species, include Mobile Integrons (MIs), that transport over 170 resistance genes. In contrast, Sedentary Chromosomal Integrons (SCIs), ubiquitous in Vibrio species, are primarily found within bacterial chromosomes. However, their functions are not related to antimicrobial resistance and are largely unexplored. SCIs, typified by the Superintegron (SI) in Vibrio cholerae, represent ancient and highly variable regions in bacterial genomes. The SI is extensive, housing 179 integron cassettes, mostly with unknown functions. Although 19 cassettes encode toxin-antitoxin (TA) systems, which stabilize the array, the intricacies of the SI are challenging to study due to its size and unique integrase. To investigate the SI's impact on V. cholerae, we developed the SeqDelTA approach, enabling the gradual deletion of the SI. This deletion facilitates the use of standard genetic tools without SI interference. Our in-depth analysis of the resulting ∆SI strain, covering various aspects, demonstrated no significant alterations in V. cholerae's physiology. Despite their extended coevolution, SCIs appear to be genetically isolated from the host genome.

2023-11-23 | GSE247496 | GEO

Pseudomonas fulva

Project description:class 3 integron

| PRJDB6447 | ENA

Transcriptome Profile of Quantum Dots on Saccharomyces cerevisiae

Project description:Transcriptome Profile of CdSe/ZnS and InP/ZnS Quantum Dots on Saccharomyces cerevisiae

2021-01-30 | GSE165805 | GEO

5-hydroxymethylcytosine-mediated epigenetic dynamics during neurodevelopment and aging

Project description:This SuperSeries is composed of the following subset Series: GSE32050: 5-hydroxymethylcytosine-mediated epigenetic dynamics during neurodevelopment and aging [5hmC Capture and Seq] GSE32187: 5-hydroxymethylcytosine-mediated epigenetic dynamics during neurodevelopment and aging [mRNA profiling] Refer to individual Series

2011-10-29 | E-GEOD-32188 | biostudies-arrayexpress

Vaccinia virus strain:VC-R2

Project description:Cascade evolution in poxviruses: retrotransposon-mediated host gene capture, complementation and recombination

| PRJNA669146 | ENA

Cascade evolution in poxviruses: retrotransposon-mediated host gene capture, complementation and recombination

Project description:Cascade evolution in poxviruses: retrotransposon-mediated host gene capture, complementation and recombination

| PRJEB40919 | ENA

The RNA methylation level of A549 was altered by nanomaterial incubation.

Project description:We reported changes in RNA methylation levels in A549 cells caused by black phosphorus quantum dots and titanium dioxide nanoparticles.

2023-10-21 | GSE159776 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data