Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

MicroRNA-seq of miRNAs from control and DIS3L knockdown HeLa cells

ABSTRACT: microRNA-seq of miRNAs from control and DIS3L knockdown HeLa cells

PROVIDER: PRJEB30474 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR3014416.fastq.gz	Fastqsanger.gz
	ERR3014417.fastq.gz	Fastqsanger.gz
	ERR3014418.fastq.gz	Fastqsanger.gz
	ERR3014419.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

microRNA-seq of miRNAs isolated from control or DIS3L2 knockdown HeLa cells

Project description:microRNA-seq of miRNAs isolated from control or DIS3L2 knockdown HeLa cells

| PRJEB30469 | ENA

Hela cell line microRNA profiles following CFIm25 knockdown

Project description:Purpose: When CFIm25 knockdown induces global APA events, we aim to investigate ceRNA landscape change based on microRNA expression change. Methods: microRNA from HeLa cells treated with control siRNA and CFIm25 siRNA were subject to RNA-Seq. Results: Consistent with our observations in TCGA breast cancer, we found a surprisingly high enrichment of 3ʹUTR shortening genes' ceRNA partners to tumor suppressors and their down-regulation. Conclusion: Our work indicated that the shortened 3ʹ-UTRs might direct the released miRNAs to repress their ceRNA partners in trans, which are enriched in ceRNET hubs and tumor suppressors, thereby effectively disrupting normal ceRNET and contributing to tumorigenesis.

2018-02-20 | GSE78198 | GEO

microRNA-seq of miRNAs isolated from control or DIS3L2 knockdown HeLa cells

Project description:DIS3L2 is a 3' to 5' exonuclease that plays a role in the degradation of specific non-coding RNAs in the cell. The aim of this experiment if to identify miRNAs regulated by DIS3L2 in HeLa cells.

2018-12-29 | E-MTAB-7549 | biostudies-arrayexpress

Expression data from Dicer and Ago2-knockdown HeLa cells

Project description:Dicer and Argonaute2 (Ago2) gene is involving in microRNA (miRNA) maturation. Knockdown of these genes has great impact on miRNA expression profiles. We used microarrays to detail the miRNA expression profiles in Dicer- and Ago2-knockdown HeLa cells and demonstarted that the significant difference between Ago2-knockdown and Dicer- and Ago2-co-knockdown HeLa cells were not found.

2015-09-30 | GSE67992 | GEO

Drosha or DGCR8 knockdown effects on mRNA levels in HeLa

Project description:Anaysis of mRNA changes in HeLa cells following knockdown of Drosha or DGCR8. Drosha is a nuclear RNase III that carries out microRNA (miRNA) processing by cleaving primary microRNA transcript (pri-miRNA). DGCR8 is an essential co-factor of Drosha. Keywords: gene expression array-based (RNA / in situ oligonucleotide)

2009-02-05 | GSE13639 | GEO

RNA-Seq of control, RNPS1 knockdown and rescue in HeLa cells

Project description:RNA-Seq of control, RNPS1 knockdown and rescue in HeLa cells

| PRJEB25518 | ENA

microRNA-seq of miRNAs from control and DIS3L knockdown HeLa cells

Project description:DIS3L is a 3' to 5' exonuclease that plays a role in the degradation of cellular RNAs. The aim of this experiment was to identify miRNAs that are regulated by DIS3L in human cells.

2018-12-29 | E-MTAB-7548 | biostudies-arrayexpress

Transcriptome analysis of Control and FBXO38 knockdown in HCT116 and Hela cell lines

Project description:F-box only protein 38 (FBXO38), which belongs to SKP1-CUL1-F-box protein (SCF) family, exhibits the ability to mediate Lys48-linked poly-ubiquitination and subsequent proteasome degradations of PD-1.To investigate the effect of FBXO38 knockdown on transcription in tumor, we constructed control and FBXO38 knockdown by shRNA in Hela and HCT116 cell lines. We found that FBXO38 may interact with the immune pathway in the tumor.

2024-02-07 | GSE220879 | GEO

Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

Project description:We performed RNA-seq experiments on two replicate samples from each HNRNPC knockdown (KD1 and KD2) As well as from control HeLa cells. Library preparation was preformed according to mRNA Sequencing Sample Preparation Guide (Illumina, Part # 1004898 REV. D). Reagents were taken from the Illumina sample preparation kit (Illumina, CAT # RS-930-1001). Knockdown and control samples were sequenced together in one flowcell on one and two lanes, respectively.

2013-01-31 | E-MTAB-1147 | biostudies-arrayexpress

Microarray upon ZMYND8 knockdown in Hela cells

Project description:ZMYND8, a chromatin reader/effector protein, knockdown in Hela cells

2018-11-09 | GSE106900 | GEO