Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Genomic DNA sequencing of loose and compact cluster `Pinot noir´ clones.

PROVIDER: PRJEB30551 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR3046970_1.fastq.gz	Fastqsanger.gz
	ERR3046970_2.fastq.gz	Fastqsanger.gz
	ERR3046971_1.fastq.gz	Fastqsanger.gz
	ERR3046971_2.fastq.gz	Fastqsanger.gz
	ERR3046968_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Expression analysis of Vitis Vinifera clones differing for compactness

Project description:Grapevine cluster compactness is a multi-componential trait of agronomical interest; it greatly influences the vineyard management and the visual aspect of table grape. Clusters with greater compactness are more susceptible to disease. The compactness can be break down in a patchwork of agronomical traits, each having agronomical importance that includes parameters related to inflorescence and cluster architecture (cluster length and width, length of pedicels, etc.), fruitfulness (number of berries, number of seeds) and berry (size, shape, volume...). Through visual evaluation of a collection of 730 clones from the cultivar Tempranillo and 501 clones from Garnacha Tinta we identified and fully phenotyped distinct clones which transcriptomes were compared at key developmental stages in order to identify the genes playing a role in mechanisms involved in cluster compactness such as the ones determining number of berries, cluster length or berry size. Key genes involved in this process were identified. The findings lead us to hypothesize that berry size and/or number at ripening are greatly influenced by the rate of cell replication in flowers during the first stages after pollination. A total of 57 samples were hybridized. Comparison G1 was performed between clones showing differences in the cluster compactness and in the total number of berries per cluster and berries size (compact: clone 1134. loose: clone 0368). Comparison G2 was performed between two compact clones (Garnacha Tinta 147 and 1134) significantly differing for cluster length and number of nodes (branches) of the rachis. Comparison G3 was performed with two loose clones (Garnacha Tinta 681 and 1154) differing in the number of nodes of the rachis (p<0.01). Comparisons G4 and T were performed between clones showing differences in the cluster compactness and in the total number of berries per cluster (compact: clones 0906 and 0126. loose: clones 1154 and 1041).

2015-08-31 | E-GEOD-67708 | biostudies-arrayexpress

Vitis vinifera

Project description:Cluster thinning effect on Pinot noir berry ripening.

| PRJNA394737 | ENA

Metabolite and transcript profile of grapevine clusters at 6th,7th,8th WAA and the effect of 1-MCP on ripening

Project description:We report the trasncriptomic profile of Pinot Noir at ethylene peak. The main aim is to understand the effect of 1-MCP on gene transcription and during this ripening window.

2018-06-17 | GSE83494 | GEO

Vitis vinifera

Project description:Pinot Noir RNA-seq

| PRJNA837346 | ENA

Vitis vinifera cultivar:Pinot Noir

Project description:Vitis vinifera Pinot Noir Genome sequencing

| PRJNA951461 | ENA

Vitis vinifera

Project description:Pinot clones resequencing

| PRJNA321480 | ENA

Transcription profiling of grapevine cultivar Pinot Noir berry development during three seasons.

Project description:Global gene expression analysis of grapevine cv. Pinot Noir berries during development and ripening. Time-course comparison of samples collected at three developmental stages (stages 33, 34 and 36 according to the modified E-L system, ref: Coombe BG, Aust J Grape Wine Res 1995, 1: 104-110) during three seasons (2003, 2005 and 2006).

2008-01-16 | E-MEXP-1282 | biostudies-arrayexpress

Vitis vinifera cultivar:Pinot Noir

Project description:Vitis vinifera cultivar:Pinot Noir Epigenomics

| PRJNA490160 | ENA

Vitis vinifera

Project description:Pinot Noir berry transcriptome during ripening.

| PRJNA145369 | ENA

Characterization of transcriptional reprogramming of Vitis vinifera during Trichoderma-induced resistance and in response to Plasmopara viticola using RNA-Seq

Project description:We have carried out a global transcriptional analysis of grapevine resistance induced by Trichoderma harzianum T39 against Plasmopara viticola using high-throughput Illumina sequencing technology. Four samples were analyzed: control (C), T39-treated (T39), P. viticola-inoculated control (C+P.v.) and P. viticola-inoculated T39-treated (T39 P.v.) plants. Three biological replicates (named A, B and C) were analyzed for each sample and sequenced twice (named 1 and 2). Reads were aligned to the Pinot Noir ENTAV 115 genome and then analyzed to measure gene expression levels. Differentially expressed genes have been identified by statistical analysis.

2012-06-27 | E-MTAB-4324 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data