Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

An Australian Pseudomonas aeruginosa shared strain: AUST-06

ABSTRACT: Whole genome analysis of the Australian AUST-06 strain associated with cross-infection, isolated from people with cystic fibrosis

PROVIDER: PRJEB35026 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR3611250_1.fastq.gz	Fastqsanger.gz
	ERR3611250_2.fastq.gz	Fastqsanger.gz
	ERR3611260_1.fastq.gz	Fastqsanger.gz
	ERR3611260_2.fastq.gz	Fastqsanger.gz
	ERR3611270_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 100

Similar Datasets

A sub-lineage of the Australian Pseudomonas aeruginosa AUST-02 strain associated with increased multi-drug resistance.

Project description:Whole genome analysis of an Australian AUST-02 strain sublineage associated with increased multi-drug resistance, isolated from patients attending a cystic fibrosis centre in Brisbane.

| PRJEB14781 | ENA

Whole genome sequencing of Pseudomonas aeruginosa Australian epidemic clone AUST-02 from CF patients

Project description:Evolution of the AUST-2 prevalent strain of Pseudomonas aeruginosa in Australian CF patients

| PRJEB21755 | ENA

Bartonella australis Aust/NH1

Project description:Bartonella australis Aust/NH1 Genome sequencing

| PRJNA73943 | ENA

RNA Sequencing of Mycobacterium dioxanotrophicus PH-06

Project description:Mycobacterium dioxanotrophicus PH-06 can degrade 1,4-dioxane (dioxane), which is a groundwater contaminant of emerging concern. In order to find the genes involved in dioxane degradation. RNA sequencing was first used to investigate gene expression levels of PH-06 during growth on two different carbon sources (dioxane and glucose). The sequencing shows that a monooxygenase gene cluster was upregulated when treated with dioxane relative to glucose.

2018-08-01 | GSE103019 | GEO

Agilent Microarray of South Australian bread wheat

Project description:Transcriptome of South Australian bread wheat under salt stress

2017-07-02 | E-MTAB-3270 | biostudies-arrayexpress

Gastric Cancer Subtyping (Australian Patient Cohort)

Project description:Genome-wide mRNA expression profiles of 70 primary gastric tumors from the Australian patient cohort. Like many cancers, gastric adenocarcinomas (gastric cancers) show considerable heterogeneity between patients. Thus, there is intense interest in using gene expression profiles to discover subtypes of gastric cancers with particular biological properties or therapeutic vulnerabilities. Identification of such subtypes could generate insights into the mechanisms of cancer progression or lay the foundation for personalized treatments. Here we report a robust gene-xpression-based clustering of a large collection of gastric adenocarcinomas from Singaporean patients [GSE34942 and GSE15459]. We developed and validated a classifier for the three subtypes in Australian patient cohort.

2012-07-05 | GSE35809 | GEO

Gastric Cancer Subtyping (Australian Patient Cohort)

2012-07-04 | E-GEOD-35809 | biostudies-arrayexpress

Australian Chronic Allograft Dysfunction II

Project description:The Australian Chronic Allograft Dysfunction (AUSCAD) study is an ongoing single centre cohort study at Westmead hospital in Australia. In this section of the study, we aimed to identify biomarkers for chronic allograft dysfunction in kidney transplant recipients. Our study recruited 136 patients, each having protocol renal allograft biopsies taken pre transplantation.

2024-04-05 | GSE261240 | GEO

Australian Chronic Allograft Dysfunction III

Project description:The Australian Chronic Allograft Dysfunction (AUSCAD) study is an ongoing single centre cohort study at Westmead hospital in Australia. In this section of the study, we aimed to identify biomarkers for allograft rejection in kidney transplant recipients, 3-months after their transplant. Our study recruited 123 patients, each having protocol renal allograft biopsies taken 3-months post transplantation.

2024-04-05 | GSE261892 | GEO

Australian Chronic Allograft Dysfunction I

Project description:The Australian Chronic Allograft Dysfunction (AUSCAD) study is an ongoing single centre cohort study at Westmead hospital in Australia. In this section of the study, we aimed to identify biomarkers for rejection phenotypes in kidney transplant recipients, 3-months after their transplant. Our study recruited 70 patients, each having whole blood taken at the time of their 3-month protocol biopsy.

2024-04-05 | GSE248752 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data