Project description:Using RNAseq of small RNA libraries isolated from the gill tissue of the Antarctic fish Trematomus bernacchii we have characterized the termal sensitivity of miRNA homologues in these highly stenothermic fish.

2019-04-02 | GSE128132 | GEO

Co-cultivation and transcriptome sequencing of two co-existing fish pathogens Moritella viscosa and Aliivibrio wodanis.

Project description:Aliivibrio wodanis and Moritella viscosa have often been isolated together from fish with winter ulcer. Little is known about the interaction between the two bacterial species and how the presence of one bacterial species affects the behaviour of the other. The impact on bacterial growth in co-culture was investigated in vitro, and the presence of A. wodanis has a strong inhibitorial effect on M. viscosa. Further, we have sequenced the complete genomes of these two marine Gram-negative species, and have performed transcriptome analysis of the bacterial gene expression levels from in vivo samples. Using bacterial implants in the fish abdomen, we demonstrate that the presence of A. wodanis is altering the gene expression levels of M. viscosa compared to when the bacteria are implanted separately. The impeding effect on growth and the change in the global gene expression pattern of M. viscosa when the two pathogens co-exists is discussed in this paper.

2014-11-30 | E-MTAB-2851 | biostudies-arrayexpress

Foodborne pathogens

Project description:Artisanefood foodborne pathogens

| PRJNA876122 | ENA

fish metagenome

Project description:Effects of Administration of Epidermal-Derived Bacteria that Inhibit the Growth of Fish Pathogens on the Skin Microbiota of Fish

| PRJDB18320 | ENA

fish metagenome isolate:hybrid fish | breed:fish

Project description:fish metagenome isolate:hybrid fish | breed:fish Metagenome

| PRJNA788359 | ENA