Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Methanotrophs in wetland paddies

ABSTRACT: methanotrophs in wetland paddies

PROVIDER: PRJEB40045 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR2103034_1.fastq.gz	Fastqsanger.gz
	ERR2103034_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Using the Daphnia magna Transcriptome to Distinguish Water Source: Wetland and Stormwater Case Studies

Project description:Investigation of mRNA expression (using HiSeq 2500) in response to treatment of Daphnia magna to pyriproxyfen, wetland water, or stormwater samples.

2022-07-26 | GSE208591 | GEO

Methanotrophs

Project description:Methanotrophs Raw sequence reads

| PRJNA688132 | ENA

Methanotrophs

Project description:Methanotrophs Raw sequence reads

| PRJNA996764 | ENA

Biomarker Response of Aerobic Methanotrophs to Methane Oxidation Rates and Short-Term Methane and Oxygen Limitation

Project description:Methanotrophs, which help regulate atmospheric levels of methane, are active in diverse natural and man-made environments. This range of habitats and the feast-famine cycles seen by many environmental methanotrophs suggest that methanotrophs dynamically mediate rates of methane oxidation. Global methane budgets require ways to account for this variability in time and space. Functional gene biomarker transcripts are increasingly being studied to inform the dynamics of diverse biogeochemical cycles. Previously, per-cell transcript levels of the methane oxidation biomarker, pmoA, were found to vary quantitatively with respect to methane oxidation rates in model aerobic methanotroph, Methylosinus trichosporium OB3b. In the present study, these trends were explored for two additional aerobic methanotroph pure cultures, Methylocystis parvus OBBP and Methylomicrobium album BG8. At steady-state conditions, per cell pmoA mRNA transcript levels strongly correlated with per cell methane oxidation across the three methanotrophs across many orders of magnitude of activity (R2 = 0.91). Additionally, genome-wide expression data (RNA-seq) were used to explore transcriptomic responses of steady state M. album BG8 cultures to short-term CH4 and O2 limitation. These limitations induced regulation of genes involved in central carbon metabolism (including carbon storage), cell motility, and stress response.

2021-11-17 | GSE188821 | GEO

Methanotrophs

Project description:Diversity of methanotrophs in Chinese grassland soils

| PRJEB15425 | ENA

TRANSCRIPTOME METHANOTROPHS

Project description:TRANSCRIPTOME METHANOTROPHS Raw sequence reads

| PRJNA975127 | ENA

Wetland soil incubation treated with sulfate and oxygen

Project description:To unravel complex dynamics of environmental disturbance and microbial metabolic activities, we set up laboratory microcosms to investigate the effects of SO42- and O2 alone or in combination on microbial activities and interactions, as well as the resulting fate of carbon within wetland soil. We used proteogenomics to characterize the biochemical and physiological responses of microbial communities to individual perturbations and their combined effects. Stoichiometric models were employed to deconvolute carbon exchanges among the main functional guilds. These findings can contribute to the development of mechanistic models for predicting greenhouse gas emissions from wetland ecosystems under various climate change scenarios.

2024-05-19 | PXD047453 | Pride

wetland four-member synthetic community

Project description:The synthetic microbial community used in this study was composed of the major functional guilds (cellulolytic fermenter, sulfate reducer, hydrogenotrophic methanogen and acetoclastic methanogen) that mediate the anaerobic conversion of cellulosic biomass to CH4 and CO2 in wetland soils. The choice of a facultative sulfate-reducing bacterium (Desulfovibrio vulgaris Hildenborough) introduced metabolic versatility and enabled investigations into the community response to sulfate intrusion. The growth status of these multi-species cultures was measured over a week by daily analysis of substrate consumption and product accumulation. The quad-cultures were analyzed with metaproteomics at the end of experiment to characterize the community structure and metabolic activities.

2023-02-17 | PXD035759 | Pride

Project description:Riparian wetland methanotrophs

| PRJNA674997 | ENA

Methanotrophs in stratified lakes

Project description:Niche partitioning of methanotrophs in stratified lakes

| PRJEB27579 | ENA