Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Vertebrate gut archaea 16S rRNA

ABSTRACT: Gut vertebrate gut archaeal community assessment via archaea-targeting 16S rRNA primers (arch516F-arch915R). Feces/gut-contents assessed from mostly wild animals belonging to 5 vertebrate clades: Mammalia, Aves, Reptilia, Amphibia, and Actinopterygii.

PROVIDER: PRJEB40672 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR4658380_1.fastq.gz	Fastqsanger.gz
	ERR4658380_2.fastq.gz	Fastqsanger.gz
	ERR4658390_1.fastq.gz	Fastqsanger.gz
	ERR4658390_2.fastq.gz	Fastqsanger.gz
	ERR4658400_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 934

Similar Datasets

dcPerAmph

Project description:Persicaria amphibia

| PRJEB76751 | ENA

Wittrockiella amphibia

Project description:Wittrockiella amphibia

| PRJNA894671 | ENA

Actinopterygii sp.

Project description:Actinopterygii sp. overview

| PRJNA1045783 | ENA

Project description:Vertebrate gut metagenome analysis

| PRJNA616045 | ENA

vertebrate gut metagenome

Project description:vertebrate gut metagenome Metagenome

| PRJNA576558 | ENA

Metazoa

Project description:Various animal species, especially those in the early diverging clades Medusozoa, Porifera and Ctenophora, mostly targeted loci environmental

| PRJNA1077907 | ENA

Persicaria amphibia

Project description:Persicaria amphibia overview

| PRJNA1125976 | ENA

Actinopterygii environmental sample

Project description:Actinopterygii environmental sample overview

| PRJNA1023354 | ENA

Hot spots of DNA double-strand breaks and genomic contacts of human rDNA units are involved in epigenetic regulation [rDNA units]

Project description:4C procedure was used for analysis of genomic contacts of rDNA units in HEK 293T cells. The primers for 4C were selected inside IGS. Our data indicate that mostly rDNA units exhibit close proximity with pericentromeric regions in different chromosomes. We also detected the contacts within a rDNA unit and between rDNA units.

2014-10-04 | GSE49193 | GEO

Transcription profiling of mouse colonic transcriptional changes evoked by E. rectale-B. thetaiotaomicron co-colonization

Project description:The adult human gut microbial community is typically dominated by two bacterial phyla (divisions), the Firmicutes and the Bacteroidetes. Little is known about the factors that govern the interactions between their members. Here we examine the niches of representatives of both phyla in vivo. Finished genome sequences were generated from E. rectale and E. eligens, which belong to Clostridium Cluster XIVa, one of the most common gut Firmicute clades. Comparison of these and 25 other gut Firmicutes and Bacteroidetes indicated that the former possess smaller genomes and a disproportionately smaller number of glycan-degrading enzymes. Germ-free mice were then colonized with E. rectale and/or a prominent human gut Bacteroidetes, Bacteroides thetaiotaomicron, followed by whole genome transcriptional profiling of both organisms in their distal gut (cecal) habitat as well as host responses, high resolution proteomic analysis of cecal contents, and biochemical assays of carbohydrate metabolism. B. thetaiotaomicron adapts to E. rectale by upregulating expression of a variety of polysaccharide utilization loci (PULs) encoding numerous glycoside hydrolase gene families, and by signaling the host to produce mucosal glycans that it, but not E. rectale, can access. E. rectale adapts to B. thetaiotaomicron by decreasing production of its glycan-degrading enzymes, increasing expression of selected amino acid and sugar transporters, and facilitating glycolysis by reducing levels of NADH, in part via generation of butyrate from acetate, which in turn is utilized by the gut epithelium. This simplified model of the human gut microbiota illustrates niche specialization and functional redundancy within members of major gut bacterial phyla, and the importance of host glycans as a nutrient foundation that ensures ecosystem stability. Experiment Overall Design: four biological replicates per group. NMRI mice, males (12-14 weeks old).

2009-03-07 | E-GEOD-14686 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data