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L. gongylyphorus transcriptome

ABSTRACT: Transcriptome of the fungus L. gongylophorus cultivated by the leaf-cutting ant Acromyrmex echinatior

PROVIDER: PRJEB4168 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	ERP003429_aligned.bam	Bam
	ERP003429_aligned.bam.bai	Bam
	jl130511_rmma110512_aligned.bam	Bam
	jl130511_rmma110512_aligned.bam.bai	Bam
	Ae322g4544_Ae322m454.bam	Bam

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Caste-specific RNA editomes in the leaf-cutting ant Acromyrmex echinatior

Project description:Eusocial insects have evolved the capacity to generate adults with distinct morphological, reproductive and behavioural phenotypes from the same genome. Recent studies suggest that RNA editing might enhance the diversity of gene products at the post-transcriptional level, particularly to induce functional changes in the nervous system. Using head samples from the leaf-cutting ant Acromyrmex echinatior, we compare RNA editomes across eusocial castes, identifying ca. 11,000 RNA editing sites in gynes, large workers and small workers. Those editing sites map to 800 genes functionally enriched for neurotransmission, circadian rhythm, temperature response, RNA splicing and carboxylic acid biosynthesis. Most A. echinatior editing sites are species specific, but 8M-bM-^@M-^S23% are conserved across ant subfamilies and likely to have been important for the evolution of eusociality in ants. The level of editing varies for the same site between castes, suggesting that RNA editing might be a general mechanism that shapes caste behaviour in ants. Analysis of genome-wide RNA editing in three different female castes of the the leaf-cutting ant Acromyrmex echinatior.

2014-10-02 | E-GEOD-51576 | biostudies-arrayexpress

Caste-specific RNA editomes in the leaf-cutting ant Acromyrmex echinatior

Project description:Eusocial insects have evolved the capacity to generate adults with distinct morphological, reproductive and behavioural phenotypes from the same genome. Recent studies suggest that RNA editing might enhance the diversity of gene products at the post-transcriptional level, particularly to induce functional changes in the nervous system. Using head samples from the leaf-cutting ant Acromyrmex echinatior, we compare RNA editomes across eusocial castes, identifying ca. 11,000 RNA editing sites in gynes, large workers and small workers. Those editing sites map to 800 genes functionally enriched for neurotransmission, circadian rhythm, temperature response, RNA splicing and carboxylic acid biosynthesis. Most A. echinatior editing sites are species specific, but 8–23% are conserved across ant subfamilies and likely to have been important for the evolution of eusociality in ants. The level of editing varies for the same site between castes, suggesting that RNA editing might be a general mechanism that shapes caste behaviour in ants.

2014-10-02 | GSE51576 | GEO

Acromyrmex echinatior genome sequencing project

Project description:The genome of the leaf-cutting ant Acromyrmex echinatior

| PRJEB2532 | ENA

Leaf-cutting ant feces LC-MS/MS

Project description:Leaf-cutting ants of the genera Acromyrmex and Atta live in mutualistic symbiosis with a basidiomycete fungus (Leucocoprinus gongylophorus), which they cultivate as fungal gardens in underground nest chambers. The ants provide the fungus with a growth substrate consisting of freshly cut leaf fragments. After new leaf fragments are brought into the nest, the ants chew them into smaller pieces and apply droplets of fecal fluid to the leaf pulp before depositing this mixed substrate in the fungus garden and inoculating it with small tufts of mycelium from older parts of the garden. Previous work has shown that the fecal fluid contains a range of digestive enzymes including proteases, amylases, chitinases, cellulases, pectinases, hemicellulases and laccases, and that most of these enzymes are produced by the fungal symbiont in specialized structures called gongylidia that the ants eat. After ingestion, the enzymes apparently pass unharmed through the alimentary channel of the ants and end up in the fecal fluid. Most likely this complex system is an adaptation of the ant-fungus symbiosis to a herbivorous lifestyle, as the ancient ancestors of the ants and the fungus lived as hunter-gatherers and saprotrophs, respectively. The promise of fecal fluid for getting insight into the molecular adaptations that enables the ant-fungus holosymbiont to live as a herbivore, led us to investigate the fecal fluid proteome using LC-MS/MS in order to get a more comprehensive picture of the repertoire of proteins present.

2021-01-12 | PXD016395 | Pride

Acromyrmex echinatior

Project description:Caste-specific RNA editomes in the leaf-cutting ant Acromyrmex echinatior

| PRJNA223531 | ENA

Acromyrmex echinatior

Project description:Acromyrmex echinatior overview

| PRJNA62767 | ENA

Acromyrmex echinatior

Project description:Acromyrmex echinatior Raw sequence reads

| PRJNA1147124 | ENA

Acromyrmex echinatior strain:colony Ae372

Project description:Acromyrmex echinatior genome sequencing project.

| PRJNA62733 | ENA

Atta cephalotes

Project description:Atta cephalotes (leaf-cutting ant) overview

| PRJNA48117 | ENA

From plants to ants: Evaluating lipidomic changes in leaf-cutter ant fungus gardens

Project description:Leaf-cutter ants use fresh plant material to cultivate an obligate mutualistic fungus Leucoagaricus gongylophorus in specialized fungus gardens to access and transform nutrients from plant biomass that would otherwise be unavailable to the ants. Here, we evaluated the lipidomic differences between the leaves feeding the gardens, gongylidia produced by the fungus to feed the ants, and spatially-resolve regions of the fungus garden at initial to advanced stages of leaf degradation.

2019-10-30 | MSV000084520 | MassIVE

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