Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Acromyrmex echinatior

ABSTRACT: Caste-specific RNA editomes in the leaf-cutting ant Acromyrmex echinatior

PROVIDER: PRJNA223531 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1015500_1.fastq.gz	Fastqsanger.gz
	SRR1015500_2.fastq.gz	Fastqsanger.gz
	SRR1015510_1.fastq.gz	Fastqsanger.gz
	SRR1015510_2.fastq.gz	Fastqsanger.gz
	SRR1015520_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 72

Similar Datasets

Caste-specific RNA editomes in the leaf-cutting ant Acromyrmex echinatior

Project description:Eusocial insects have evolved the capacity to generate adults with distinct morphological, reproductive and behavioural phenotypes from the same genome. Recent studies suggest that RNA editing might enhance the diversity of gene products at the post-transcriptional level, particularly to induce functional changes in the nervous system. Using head samples from the leaf-cutting ant Acromyrmex echinatior, we compare RNA editomes across eusocial castes, identifying ca. 11,000 RNA editing sites in gynes, large workers and small workers. Those editing sites map to 800 genes functionally enriched for neurotransmission, circadian rhythm, temperature response, RNA splicing and carboxylic acid biosynthesis. Most A. echinatior editing sites are species specific, but 8M-bM-^@M-^S23% are conserved across ant subfamilies and likely to have been important for the evolution of eusociality in ants. The level of editing varies for the same site between castes, suggesting that RNA editing might be a general mechanism that shapes caste behaviour in ants. Analysis of genome-wide RNA editing in three different female castes of the the leaf-cutting ant Acromyrmex echinatior.

2014-10-02 | E-GEOD-51576 | biostudies-arrayexpress

Caste-specific RNA editomes in the leaf-cutting ant Acromyrmex echinatior

Project description:Eusocial insects have evolved the capacity to generate adults with distinct morphological, reproductive and behavioural phenotypes from the same genome. Recent studies suggest that RNA editing might enhance the diversity of gene products at the post-transcriptional level, particularly to induce functional changes in the nervous system. Using head samples from the leaf-cutting ant Acromyrmex echinatior, we compare RNA editomes across eusocial castes, identifying ca. 11,000 RNA editing sites in gynes, large workers and small workers. Those editing sites map to 800 genes functionally enriched for neurotransmission, circadian rhythm, temperature response, RNA splicing and carboxylic acid biosynthesis. Most A. echinatior editing sites are species specific, but 8–23% are conserved across ant subfamilies and likely to have been important for the evolution of eusociality in ants. The level of editing varies for the same site between castes, suggesting that RNA editing might be a general mechanism that shapes caste behaviour in ants.

2014-10-02 | GSE51576 | GEO

Acromyrmex echinatior genome sequencing project

Project description:The genome of the leaf-cutting ant Acromyrmex echinatior

| PRJEB2532 | ENA

Acromyrmex echinatior

Project description:Acromyrmex echinatior overview

| PRJNA62767 | ENA

Acromyrmex echinatior

Project description:Acromyrmex echinatior Raw sequence reads

| PRJNA1147124 | ENA

Acromyrmex echinatior strain:colony Ae372

Project description:Acromyrmex echinatior genome sequencing project.