Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Genotypes of German Black Pied cows (DSN)

PROVIDER: PRJEB42513 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	genotypes.DSNcows.ARS_UCD1.2.vcf.gz	Vcf
	genotypes.DSNcows.ARS_UCD1.2.vcf.gz.tbi	Vcf

Items per page:

1 - 2 of 2

Similar Datasets

Genotypes of German Black Pied cows (DSN)

Project description:Genotypes of 1490 German Black Pied cows (DSN, "Deutsches Schwarzbuntes Niederungsrind") genotyped using Illumina? Bovine50SNP chip

2021-01-18 | PRJEB42513 | EVA

Project description:Imputed whole-genome sequencing data of 669 German Black Pied bulls (DSN)

| PRJEB82246 | ENA

Imputed whole-genome sequencing data of 669 German Black Pied bulls (DSN)

Project description:Genotypes from imputed whole-genome sequencing data of 669 German Black Pied bulls (DSN, "Deutsches Schwarzbuntes Niederungsrind")

2024-11-09 | PRJEB82246 | EVA

Project description:Design and performance of a bovine 200k SNP chip developed for endangered German Black Pied cattle (DSN)

| PRJEB46861 | ENA

DSN200k SNP chip

Project description:Design and performance of a bovine 200k SNP chip developed for endangered German Black Pied cattle (DSN)

| PRJEB45822 | ENA

Analysis of circulating microRNAs during early gestation in Japanese-Black cattle

Project description:We found four circulating miRNAs showing high levels in plasma of pregnant Japanese Black cows. Since these miRNAs are less affected by the measurement system due to hemolysis, it was suggested that they may be used as markers for early pregnancy diagnosis in cattle.

2021-06-26 | GSE178906 | GEO

Gene expression profiles in cows subjected to different stress level as assessed by cortisol in milk

Project description:To assess how different levels of stress exposure affect gene regulation mechanisms in cattle, we investigated gene expression in 13 Italian Red Pied dairy cows falling in the high- and low-variant tails of the distribution of milk cortisol concentration (MC), a neuroendocrine biomarker of stress in dairy cows, measured in 126 animals belonging to the same farm in the framework of the Gen2Phen Italian project. The ‘low-’ and ‘high-cortisol’ groups of animals had MC<370 pg/ml and>810 pg/ml, respectively. To date, 13 animals (6 low- and 7 high-MC) have been sequenced. We detected significant fold differences in the expression of 324 genes. KEGG and Gene Ontology (GO) pathway analyses indicated that these genes were mainly involved in immune regulatory pathways, glucocorticoids metabolism and nervous system functions.

2020-09-30 | GSE146971 | GEO

Bovine nose tissues: Yellow nose vs. Black nose

Project description:The coat color of mammals is determined by the melanogenesis pathway, which is responsible for maintaining the balance between black-brown eumelanin and yellow-reddish phaeomelanin. It is also believed that the color of the bovine nose is regulated in a similar manner; however, the molecular mechanism underlying pigment deposition in the black nose has yet to be elucidated. The aim of the present study was to identify melanogenesis-associated genes that are differentially expressed in the black vs. yellow nose of native Korean cows. Experiment, Yellow nose vs. Black nose HanWoo

2013-12-26 | E-GEOD-53657 | biostudies-arrayexpress

Bovine nose tissues: Yellow nose vs. Black nose

2013-12-26 | GSE53657 | GEO

Differences in fetal longissimus muscle gene expression between low and high maternal nutrition

Project description:To investigate the impact of maternal nutrient restriction on skleletal muscle gene expression, we profiled gene expression in longissimus muscle of Japanese Black fetal calves in high and low nutrient condition of pregnant maternal cows .

2021-09-29 | GSE176377 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data