Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Single-cell replication timing analysis of hTERT-RPE1 cells depleted for SAF-A protein

ABSTRACT: Single-cell replication timing analysis of hTERT-RPE1 cells depleted for SAF-A protein

PROVIDER: PRJEB43704 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR5488860.fastq.gz	Fastqsanger.gz
	ERR5488870.fastq.gz	Fastqsanger.gz
	ERR5488880.fastq.gz	Fastqsanger.gz
	ERR5488890.fastq.gz	Fastqsanger.gz
	ERR5488900.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 63

Similar Datasets

Single-cell replication timing analysis of hTERT-RPE1 cells depleted for SAF-A protein

Project description:The impact of depleting SAF-A (HNRNPU) on the genome-wide replication timing program in human hTERT-RPE1 cells was assessed by a single-cell replication timing analysis.

2021-12-15 | E-MTAB-10234 | biostudies-arrayexpress

Gene expression in hTERT-RPE1 cells with overexpression of MFRP

Project description:Gene expression was compared between hTERT-RPE1 cells and hTERT-RPE1 cells stably overexpressing mouse MFRP with an N-terminal GFP fusion.

2014-03-01 | GSE44540 | GEO

RNA-seq analysis of scaffold attachment factor A (SAF-A) knockdown in RPE1 cells

Project description:Analysis of gene expression by RNA-seq upon siRNA mediated knockdown of scaffold attachment factor A (SAF-A) versus control siRNA in RPE1 cells at 24 hour and 48 hour time points post transfection reveals SAF-A loss does not impact on gene transcription

2017-06-01 | GSE98541 | GEO

RNA-seq in human RPE1-hTERT cells

Project description:Gene expression was profiled in unperturbed RPE1-hTERT cells by RNA-seq.

2020-02-29 | GSE146121 | GEO

human hTERT-RPE1 cell spheroid : Control siRNA transfected vs. YAP1 siRNA transfected

Project description:Transcriptional profiling of human hTERT-RPE1 cell spheroids comparing Control siRNA transfected hTERT-RPE1 cell spheroids with those transfected with YAP1 siRNA.

2015-02-01 | GSE54146 | GEO

Gene expression in hTERT-RPE1 cells with overexpression of MFRP

Project description:Gene expression was compared between hTERT-RPE1 cells and hTERT-RPE1 cells stably overexpressing mouse MFRP with an N-terminal GFP fusion. RNA was prepared from hTERT-RPE1 cells overexpressing GFP-MFRP and control cells. Both conditions were done in triplicate. Affymetrix GeneChip Human Genome U133Plus2.0 arrays were used to interrogate changes in gene expression. Image data were quantified with Affymetrix Expression Console Software and normalized with Robust Multichip Analysis.

2014-03-01 | E-GEOD-44540 | biostudies-arrayexpress

human hTERT-RPE1 cell spheroid : Control siRNA transfected vs. YAP1 siRNA transfected

Project description:Transcriptional profiling of human hTERT-RPE1 cell spheroids comparing Control siRNA transfected hTERT-RPE1 cell spheroids with those transfected with YAP1 siRNA. Two-condition experiment, Control siRNA vs.YAP1 siRNA hTERT-RPE1 cell spheroids. Biological replicates: 1 Control siRNA, 1YAP1 siRNA transfected, independently grown and harvested. Bothreplicates per array.

2015-02-01 | E-GEOD-54146 | biostudies-arrayexpress

RNA-seq of human hTERT-RPE1 and RPE1-MYCN-ER cells with treatment of EtOH (0h) or tamoxifen for 24h, 48h and 72h to activate MYCN

Project description:RNA-seq upon MYCN activation in the hTERT-immortalized MYCN retinal pigmented epithelial cell line (RPE1–MYCN-ER). The parental hTERT-immortalized retinal pigment epithelium (hTERT-RPE1) was used as a control as this cell line does not carry the MYCN:ER expression construct. Both cell lines were treated with tamoxifen (400nM; 4-OHT) for MYCN induction (with 4-OHT or not). Analysis was performed 24 h, 48 h and 72 h upon MYCN activation, including four biological replicates per condition.

2021-06-03 | E-MTAB-9667 | biostudies-arrayexpress

Whole genome sequencing of RPE1-hTERT-DAAO^H2B P53KO and RPE1-hTERT-DAAO^TOM20 P53KO cells

Project description:Whole genome sequencing of RPE1-hTERT-DAAO^H2B P53 KO and RPE1-hTERT-DAAO^TOM20 P53KO cells

| PRJEB72014 | ENA

p53-dependent transcription in hTERT-RPE1 cells

Project description:p53-dependent transcription in hTERT-RPE1 cells

| PRJNA953085 | ENA