Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

IlLepSina

ABSTRACT: Leptidea sinapis (wood white), genomic and transcriptomic data

PROVIDER: PRJEB43784 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR6054631_1.fastq.gz	Fastqsanger.gz
	ERR6054631_2.fastq.gz	Fastqsanger.gz
	ERR6054632_1.fastq.gz	Fastqsanger.gz
	ERR6054632_2.fastq.gz	Fastqsanger.gz
	ERR6054633_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 13

Similar Datasets

ilLepSina

Project description:Leptidea sinapis (wood white)

| PRJEB43801 | ENA

ilLepSina1

Project description:Leptidea sinapis (wood white) genome assembly, ilLepSina1

| PRJEB43998 | ENA

ilLepSina1 alternate haplotype

Project description:Leptidea sinapis (wood white) genome assembly, ilLepSina1, alternate haplotype

| PRJEB43999 | ENA

Leptidea sinapis Recombination Map

Project description:Fine-scale recombination rate variation in the wood white butterfly Leptidea sinapis

| PRJEB56690 | ENA

Gene expression profiling across ontogenetic stages in wood white (Leptidea sinapis) reveals pathways linked to butterfly diapause regulation.

Project description:In temperate latitudes, many insects enter diapause (dormancy) during the cold season, a period during which developmental processes come to a standstill. The wood white (Leptidea sinapis) is a butterfly species distributed across western Eurasia that shows photoperiod-induced diapause with variation in critical day-length across populations at different latitudes. We assembled transcriptomes and estimated gene expression levels at different developmental stages in experimentally induced directly developing and diapausing cohorts of a single Swedish population of L. sinapis to investigate the regulatory mechanisms underpinning diapause initiation. Different day lengths resulted in expression changes of developmental genes and affected the rate of accumulation of signal molecules, suggesting that diapause induction might be controlled by increased activity of monoamine neurotransmitters in larvae reared under short-day light conditions. Expression differences between light treatment groups of two monoamine regulator genes (DDC and ST) were observed already in instar III larvae. Once developmental pathways were irreversibly set at instar V, a handful of genes related to dopamine production were differentially expressed leading to a significant decrease in expression of global metabolic genes and increase in expression of genes related to fatty acid synthesis and sequestration. This is in line with a time-dependent (hour-glass) model of diapause regulation where a gradual shift in the concentration of monoamine neurotransmitters and their metabolites during development of larvae under short-day conditions leads to increased storage of fat, decreased energy expenditures, and ultimately developmental stasis at the pupal stage.

2018-02-02 | E-MTAB-6454 | biostudies-arrayexpress

Leptidea sinapis

Project description:Leptidea sinapis overview

| PRJNA724779 | ENA

Rapid increase in genome size as a consequence of transposable element hyperactivity in wood-white (Leptidea) butterflies.

Project description:Characterising and quantifying the genome size expansion in wood-white (Leptidea) butterflies. This study includes Genome sequencing of Leptidea sinapis and resequencing of Leptidea reali and Leptidea juvernica.

| PRJEB21838 | ENA

Gene expression profiling across ontogenetic stages in wood white (Leptidea sinapis) reveals pathways linked to butterfly diapause regulation.

Project description:Gene expression profiling across ontogenetic stages in wood white (Leptidea sinapis) reveals pathways linked to butterfly diapause regulation.

| PRJEB24745 | ENA

Leptidea sinapis RAD-seq pedigree

Project description:Leptidea sinapis pedigree RAD-seq data for linkage maps

| PRJEB58905 | ENA

Microbiome composition in the wood white butterfly

Project description:Host plant diet affects fitness and induces altered gene expression and microbiome composition in the wood white (Leptidea sinapis) butterfly

| PRJEB35538 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data