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Reed warbler genome

ABSTRACT: A Chromosome-level Genome Assembly of the Reed Warbler (Acrocephalus scirpaceus)

PROVIDER: PRJEB45715 | ENA |

REPOSITORIES: ENA

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			Action	DRS
		Other
	ERR6210911_1.fastq.gz	Fastqsanger.gz
	ERR6210911_2.fastq.gz	Fastqsanger.gz
	ERR6212992.fastq.gz	Fastqsanger.gz
	ERR6212373_1.fastq.gz	Fastqsanger.gz

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Project description:Genomic consequences of range expansion and colonisation in the reed warbler (Acrocephalus scirpaceus)

| PRJEB67364 | ENA

Project description:Acrocephalus arundinaceus (great reed warbler) genome sequencing

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Acrocephalus scirpaceus

Project description:Acrocephalus scirpaceus

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Project description:Acrocephalus arundinaceus (great reed warbler) pedigree raw sequencing reads

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Acrocephalus scirpaceus

Project description:Acrocephalus scirpaceus overview

| PRJNA771150 | ENA

A Chromosome-Level Genome Assembly of the Reed Warbler (Acrocephalus scirpaceus).

Project description:The reed warbler (Acrocephalus scirpaceus) is a long-distance migrant passerine with a wide distribution across Eurasia. This species has fascinated researchers for decades, especially its role as host of a brood parasite, and its capacity for rapid phenotypic change in the face of climate change. Currently, it is expanding its range northwards in Europe, and is altering its migratory behavior in certain areas. Thus, there is great potential to discover signs of recent evolution and its impact on the genomic composition of the reed warbler. Here, we present a high-quality reference genome for the reed warbler, based on PacBio, 10×, and Hi-C sequencing. The genome has an assembly size of 1,075,083,815 bp with a scaffold N50 of 74,438,198 bp and a contig N50 of 12,742,779 bp. BUSCO analysis using aves_odb10 as a model showed that 95.7% of BUSCO genes were complete. We found unequivocal evidence of two separate macrochromosomal fusions in the reed warbler genome, in addition to the previously identified fusion between chromosome Z and a part of chromosome 4A in the Sylvioidea superfamily. We annotated 14,645 protein-coding genes, and a BUSCO analysis of the protein sequences indicated 97.5% completeness. This reference genome will serve as an important resource, and will provide new insights into the genomic effects of evolutionary drivers such as coevolution, range expansion, and adaptations to climate change, as well as chromosomal rearrangements in birds.

| S-EPMC8459166 | biostudies-literature

Project description:Acrocephalus arundinaceus (great reed warbler, samples from Turkey) raw sequencing reads

| PRJNA970800 | ENA

Comparative mRNA expression differences between two willow warbler subspecies (Phylloscopus trochilus trochilus and Phylloscopus trochilus acredula) sampled during summer and Autumn.

Project description:We have conducted a season and subspecies comparasion on the two Willow Warbler subspecies Phylloscopus trochilus trochilus and Phylloscopus trochilus acredula. The analysis were performed by hybridizing cDNA from the Willow Warbler (Phylloscopus trochilus) on a Affymetrix costum array designed for the zebra finch (Taeniopygia guttata), the Lund-zf array.

2016-02-19 | E-MTAB-4102 | biostudies-arrayexpress

Vagrant Subalpine Warbler

Project description:Genetic identification of a vagrant Subalpine Warbler

| PRJEB32235 | ENA

Reed warbler hosts fine-tune their defenses to track three decades of cuckoo decline.

Project description:Interactions between avian hosts and brood parasites can provide a model for how animals adapt to a changing world. Reed warbler (Acrocephalus scirpaceus) hosts employ costly defenses to combat parasitism by common cuckoos (Cuculus canorus). During the past three decades cuckoos have declined markedly across England, reducing parasitism at our study site (Wicken Fen) from 24% of reed warbler nests in 1985 to 1% in 2012. Here we show with experiments that host mobbing and egg rejection defenses have tracked this decline in local parasitism risk: the proportion of reed warbler pairs mobbing adult cuckoos (assessed by responses to cuckoo mounts and models) has declined from 90% to 38%, and the proportion rejecting nonmimetic cuckoo eggs (assessed by responses to model eggs) has declined from 61% to 11%. This is despite no change in response to other nest enemies or mimetic model eggs. Individual variation in both defenses is predicted by parasitism risk during the host's egg-laying period. Furthermore, the response of our study population to temporal variation in parasitism risk can also explain spatial variation in egg rejection behavior in other populations across Europe. We suggest that spatial and temporal variation in parasitism risk has led to the evolution of plasticity in reed warbler defenses.

| S-EPMC4209118 | biostudies-literature

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