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Bulk RNA-seq of organoids derived from young and old mice livers

ABSTRACT: Bulk RNA-seq of organoids derived from young and old mice livers

PROVIDER: PRJEB48152 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	ERR7058050_1.fastq.gz	Fastqsanger.gz
	ERR7058050_2.fastq.gz	Fastqsanger.gz
	ERR7058051_1.fastq.gz	Fastqsanger.gz
	ERR7058051_2.fastq.gz	Fastqsanger.gz
	ERR7058052_1.fastq.gz	Fastqsanger.gz

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Project description:Aging is associated with the decline of protein, cell, and organ function. Here, we use an integrated approach to characterize gene expression, bulk translation, and cell biology in the brains and livers of young and old rats. We identify 468 differences in protein abundance between young and old animals. The majority are a consequence of altered translation output, that is, the combined effect of changes in transcript abundance and translation efficiency. In addition, we identify 130 proteins whose overall abundance remains unchanged but whose sub-cellular localization, phosphorylation state, or splice-form varies. While some protein-level differences appear to be a generic property of the rats’ chronological age, the majority are specific to one organ. These may be a consequence of the organ’s physiology or the chronological age of the cells within the tissue. Taken together, our study provides an initial view of the proteome at the molecular, sub-cellular, and organ level in young and old rats. The corresponding dataset in Gene Expression Omnibus is <http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66715">GSE66715</a>.

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