Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

KaryoCode

ABSTRACT: Single cell transcriptomes of marine interstitial ciliates

PROVIDER: PRJEB50648 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR9525620_1.fastq.gz	Fastqsanger.gz
	ERR9525620_2.fastq.gz	Fastqsanger.gz
	ERR9525630_1.fastq.gz	Fastqsanger.gz
	ERR9525630_2.fastq.gz	Fastqsanger.gz
	ERR9525621_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 22

Similar Datasets

BRR_BRW_BRX_BRY

Project description:Marine eukaryote single cell transcriptomes

| PRJEB35086 | ENA

In vivo single cell transcriptomics reveals Klebsiella pneumoniae-governed polarization of ontogenetically distinct macrophage lineages by targeting an evolutionary conserved type I IFN-IL10-STAT6 axis to promote infection.

Project description:Mice were infected with Klebsiella pneumoniae and interstitial and alveolar macrophages isolated and subjected to single cell RNA sequencing to investigate the transcriptomes of Klebseilla-associated and uninfected bystander cells.

2022-09-16 | GSE184290 | GEO

Single cell sequencing of developing heart valves identifies novel cell populations and uncovers interstitial cell heterogeneity

Project description:This study has two main goals. The first is to define a gene expression atlas of heart valve cells and identify cell heterogeneity within postnatal heart valve development. The second is to identify interstitial cell populations involved in ECM remodeling during postnatal heart valve development. Overall design: Using droplet RNA sequencing, transcriptomes of single cells from P7 and P30 murine aortic and mitral heart valves were analyzed.

2018-07-13 | E-HCAD-18 | biostudies-arrayexpress

marine metagenome

Project description:Marine planktonic ciliates: SSU rDNA

| PRJNA297691 | ENA

Marine and freshwater three-spined stickleback (Gasterosteus aculeatus) gene expression differences

Project description:In order to identify gene expression difference between marine and freshwater stickleback populations, we compared the transcriptomes of seven adult tissues (eye, gill, heart, hypothalumus, liver, pectoral muscle, telencephalon) between a marine population sampled from the mouth of the Little Campbell river in British Columbia (LITC) and a freshwater population (Fishtrap Creek, FTC) from northern Washington. For each population, the sampled individuals were the lab-reared progeny of a single pair of wild-caught parents.

2011-12-30 | GSE34783 | GEO

2a8d9e3c-3a68-4472-b4b7-40985237aca5 - samples

Project description:CTD-ILD BALF and blood scRNA-seq dataset consists of single-cell transcriptome data of bronchoalveolar lavage fluid (BALF) and blood derived from 30 connective tissue disease-associated interstitial lung disease (CTD-ILD) and 12 idiopathic interstitial pneumonia (IIP) patients.

| EGAD00001011334 | EGA

Single-Cell Genotyping of Transcriptomes

Project description:Single-Cell Genotyping of Transcriptomes

| PRJNA483238 | ENA

Project description:Single-cell transcriptomes of archigregarines

| PRJNA1090553 | ENA

Proteomics and direct Protein-SIF of the bacterial ectosymbionts of the ciliate Kentrophoros sp. H

Project description:Kentrophoros ciliates are found worldwide in coastal marine sediment, and have an obligate symbiosis with sulfur-oxidizing Gammaproteobacteria called Candidatus Kentron. The genomes of different Kentron species suggest that they are chemolithoheterotrophs, producing new biomass from organic carbon substrates. We investigated the metaproteome of Kentrophoros sp. H and its symbiont (from two sites in the Mediterranean), to verify that hypothesized pathways of carbon and energy metabolism are indeed expressed, and to estimate the stable isotope fractionation in biomass, which can be a signature of the carbon sources used by the organism.

2019-05-31 | PXD011616 | Pride

Ciliophora sp.

Project description:Single cell transcriptomics of five ciliates in the APM clade (SAL, Ciliophora)

| PRJNA1013078 | ENA