Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

O.minuta

ABSTRACT: Oryza minuta genome sequence

PROVIDER: PRJEB5091 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR385916_1.fastq.gz	Fastqsanger.gz
	ERR385916_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Oryza minuta strain:IRGC:101141

Project description:OMAP clone end sequence project for Oryza minuta

| PRJNA13777 | ENA

Oryza minuta strain:W0016, W0051, W1319, W1323

Project description:Genome sequencing of wild rice Oryza minuta accessions

| PRJDB4699 | ENA

Oryza minuta strain:IRGC:101141

Project description:Oryza minuta strain:IRGC:101141 Genome sequencing and assembly

| PRJNA239524 | ENA

Oryza punctata strain:W0045, W1213, W1328, W1329, W1331, W1342, W1344

Project description:Genome sequencing of wild rice Oryza minuta accessions (II)

| PRJDB4700 | ENA

Simple sequence repeat identification for RBOHB gene in multiple varieties of Oryza sativa

Project description:Studies have shown that Respiratory Burst Oxidase Homolog B (RBOHB) are involved in stress response in rice plants. Primers were developed for amplification via Polymerase Chain Reaction (PCR) of a region that contained a simple sequence repeat (SSR) in RBOHB. PCR was performed on 6 different varieties of Oryza sativa. PCR product was sequenced on an ABI 3730 capillary sequence machine. Sequence data was aligned to observe differences in SSR length between each rice variety.

2017-12-31 | E-MTAB-5560 | biostudies-arrayexpress

Simple sequence repeat identification for RSS1 gene in multiple varieties of Oryza sativa

Project description:Studies have shown that Rice Salt Sensitive 1 (RSS1) is involved in stress response in rice plants. Primers were developed for amplification via Polymerase Chain Reaction (PCR) of a region that contained a simple sequence repeat (SSR) in RSS1. PCR was performed on 6 different varieties of Oryza sativa. PCR product was sequenced on an ABI 3730 capillary sequence machine. Sequence data was aligned to observe differences in SSR length between each rice variety.

2017-12-31 | E-MTAB-5583 | biostudies-arrayexpress

Transcriptome analysis of Azospirillum lipoferum 4B during its interaction with rice roots

Project description:Investigation of whole genome gene expression level changes in a Azospirillum lipoferum 4B associated to artificial roots, Oryza sativa japonica cv. Cigalon roots and Oryza sativa japonica cv. Nipponbare roots, compared to the strain grown in liquid culture. For each of the four condition, two replicates were analysed on an A. lipoferum 4B whole genome expression array designed by Roche Nimblegen, Inc. (Madison, WI, USA), based on the genome sequence (Wisniewski-DyM-CM-) et al. 2011), as follows: two replicates of 5 probes (length, 60 nucleotides) per gene, covering 6,242 genes and using a total of 62,178 probes.

2014-01-01 | E-GEOD-42450 | biostudies-arrayexpress

High-resolution mapping of H4K16 and H3K23 acetylation reveals conserved and unique distribution patterns and functions in Arabidopsis and rice

Project description:We generated genome-wide high-resolution maps of H4K16ac and H3K23ac in Arabidopsis thaliana and Oryza sativa.

2015-12-01 | GSE69426 | GEO

Host transcriptional reprogramming in response to the rice bacterial blight pathogen Xanthomonas oryzae pv.oryzae constitutively expressing the X. oryzae pv. oryzicola TAL2a effector from the high copy vector pKEB31

Project description:We performed RNA-Seq of leaves of Oryza sativa L. ssp. japonica cv. Nipponbare 48 hours after inoculation with Xanthomonas oryzae pv. oryzae strain PXO99A heterologously expressing the Tal2a effector, the designer TAL effector dT280 which targets a sequence overlapping the predicted Tal2a binding sequence in UCH, or the Tal11b effector. Results provide insight into the genes differentially regulated in a Tal2a- and dT280-specific manner. Examination of mRNA levels in Oryza sativa L. ssp. japonica cv. Nipponbare leaves at 48 hours after inoculation. Each leaf was considered a separate biological replicate.

2015-05-01 | E-GEOD-67958 | biostudies-arrayexpress

Proisotoma minuta isolate:forest soils

Project description:Proisotoma minuta mitochondrial genome

| PRJNA770163 | ENA